PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022146666.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MYB
Protein Properties Length: 254aa    MW: 28760.4 Da    PI: 8.3082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022146666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-141467148
                     TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv+++++  gg      +W+++++  g+ R++k+c++rw +yl
   XP_022146666.1 14 RGLWSPEEDEKLVNCIRRRSGGgnghafSWSSVPKLAGLARCGKSCRLRWINYL 67
                     788**************999999*****************************97 PP
2Myb_DNA-binding53.45.7e-1773116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+  +vd+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_022146666.1  73 RGSFSAEEERTIVDVHRILGNR-WAQIAKHLP-GRTDNEIKNFWNS 116
                      899*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGHGGWCRKV KVKRGLWSPE EDEKLVNCIR RRSGGGNGHA FSWSSVPKLA GLARCGKSCR  60
LRWINYLRPD LKRGSFSAEE ERTIVDVHRI LGNRWAQIAK HLPGRTDNEI KNFWNSCIKK  120
KLLAQGLDPN THNLLRPPPP PPQPTLISSS SSNNNTTCPV GAIPVHLAGD PARPTTYNNC  180
INTATNPSQQ LHRMWELDDI TLEPHPAYDH HVPAPAQLKD FDFDFDFIHD FQEDSVMDVI  240
PNSLLNYNHH PDYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-64MYB family protein