PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022146821.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

LBD

Protein Properties

Length: 242aa MW: 26757.3 Da PI: 8.4717

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022146821.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.6	6.9e-41	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C+++pyf ++p+kfa vhk+FGasnv+k+l ++ e++r da++slvyeA++r+rdPvyG++g i++lq+q++ l++el+ XP_022146821.1 52 PCAACKLLRRRCVQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVAENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQVELN 146 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_022146821.1 147 AVRAE 151 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MSKERERFDE IAKKIKRETD VSSSSNNLPH QIMGRRQTTL QSPPGTLNTI TPCAACKLLR 60 RRCVQECPFS PYFSPHEPHK FASVHKVFGA SNVSKMLMEV AENQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISALQHQIQA LQVELNAVRA EILRYKYREA NIIHSSPQHV PFLSSSAEVV 180 SIAVPPPPPL LPPPPHYDGS ASSSSSLYNR PAVAVAADYS TISSDENVPY FVRTSTTHQL 240 DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	8e-85	LBD family protein