PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022147232.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 369aa MW: 40923.2 Da PI: 9.4214

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022147232.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	12	34	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_022147232.1 12 FICEICNKGFQRDQNLQLHRRGH 34 89*******************88 PP
2	zf-C2H2	12.4	0.00049	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_022147232.1 88 WKCEKCSKKYAVQSDWKAHSKIC 110 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MSPKSLMTKN RFICEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSKEVRK KVYVCPEKNC 60 VHHDPARALG DLTGVKKHYS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKIC GTKEYKCDCG 120 TLFSRKDSFI THRAFCDALA EENSRITSVS VPTMNNHHHH NPSFINNTTL QNNNPHHHFS 180 SSSSSSLLNF QPNFAVAAAA VNSFSIIPDH GSDSKPPPQV PLWLDSPTNP NSNPFFSDHS 240 PFMPENHPFL SEPLPTASSY SVAAVVTPHM SATALLQQAA QMGPTAAAAS AIYGMNSAGL 300 LNHKNIFLPP QDGADGVHRL MGGDGVLKEE INGQSLTRDF LGVGNQLVHL PPVGSNGVEI 360 SHYSETRRH

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MSPKSLMTKN RFICEICNKG FQRDQNLQLH RRGHNLPWKL RQRTSKEVRK KVYVCPEKNC  60
VHHDPARALG DLTGVKKHYS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKIC GTKEYKCDCG  120
TLFSRKDSFI THRAFCDALA EENSRITSVS VPTMNNHHHH NPSFINNTTL QNNNPHHHFS  180
SSSSSSLLNF QPNFAVAAAA VNSFSIIPDH GSDSKPPPQV PLWLDSPTNP NSNPFFSDHS  240
PFMPENHPFL SEPLPTASSY SVAAVVTPHM SATALLQQAA QMGPTAAAAS AIYGMNSAGL  300
LNHKNIFLPP QDGADGVHRL MGGDGVLKEE INGQSLTRDF LGVGNQLVHL PPVGSNGVEI  360
SHYSETRRH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	51	KLRQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-86	C2H2 family protein