PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022147803.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family LBD
Protein Properties Length: 233aa    MW: 25164.3 Da    PI: 7.2194
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022147803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-39291301101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+ael
  XP_022147803.1  29 PCGACKFLRRKCVNGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVTRRHDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAEL 123
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     a+++++l
  XP_022147803.1 124 AAVQTQL 130
                     **99885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MADAGELVVL APRRKRGGNR QEQPDSVAPC GACKFLRRKC VNGCIFAPHF GSDQGAARFA  60
AVHKVFGASN VSKLLLHIPV TRRHDAVVTI SYEAQARLSD PVYGCVSTVL ALQQQVASLQ  120
AELAAVQTQL INSRLAFATA IQNSQPPQVG VLQPAYSNNS SVSVSASAST SAHNAINLSS  180
FTSNYDLPTE TAPSSHQLEP LHLPHRSIEE EEDEENSQLP TIFTVPDELL RRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-56LBD family protein