PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022147901.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 455aa MW: 50225 Da PI: 8.0171

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022147901.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.7	6.4e-11	96	120	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_022147901.1 96 GEKDCAHYMLTRTCKFGDSCKFDHP 120 7889********************8 PP
2	zf-CCCH	36	1.2e-11	147	173	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G+rCkF+H++ XP_022147901.1 147 PGEPDCPYFLKTQRCKFGSRCKFNHPK 173 5789*********************96 PP
3	zf-CCCH	35.4	1.7e-11	195	219	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+G +CkF+H++ XP_022147901.1 195 EPLCAFYVKTGKCKFGVNCKFHHPK 219 79*********************96 PP
4	zf-CCCH	37.3	4.6e-12	274	297	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_022147901.1 274 EVDCPFYLKTGSCKYGTSCRYNHP 297 689********************9 PP
5	zf-CCCH	41.2	2.8e-13	357	380	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG Ck+G+rCkF+H+ XP_022147901.1 357 QIECDYYMKTGDCKFGERCKFHHP 380 568********************8 PP
6	zf-CCCH	35.2	2.1e-11	409	431	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++t tCkyG++CkF H+p XP_022147901.1 409 ICPYYLKTATCKYGSTCKFDHPP 431 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MYSTQKEALR LSAADIVPRT SHLVSQYSWS GTDVAAALDS VVSGVKRSSD VLYDQTVLGS 60 CNTLGQSEAW YTSNSLAKRP RFESTSNLPV YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP 120 IWVPEGGIPD WKEVPQIANN EDLPERPGEP DCPYFLKTQR CKFGSRCKFN HPKDRSDSVG 180 AEKSDVSALP ERPSEPLCAF YVKTGKCKFG VNCKFHHPKD ILVLSGAENG NSEQTLMEAK 240 IEGGIGDFKL VKPPVSFPPA LIHNSKGLPI RLGEVDCPFY LKTGSCKYGT SCRYNHPDRN 300 AINSCNATMV HPAMVSASNM NIGLVNPSNA IYQAINPRLI QPPLGSSSSI YPQRPGQIEC 360 DYYMKTGDCK FGERCKFHHP IDRSAPKQAA QQNVKLTLAG LPRREDAIIC PYYLKTATCK 420 YGSTCKFDHP PPGEVVAMAA IQTVQGKEGE ERIDE

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MYSTQKEALR LSAADIVPRT SHLVSQYSWS GTDVAAALDS VVSGVKRSSD VLYDQTVLGS  60
CNTLGQSEAW YTSNSLAKRP RFESTSNLPV YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP  120
IWVPEGGIPD WKEVPQIANN EDLPERPGEP DCPYFLKTQR CKFGSRCKFN HPKDRSDSVG  180
AEKSDVSALP ERPSEPLCAF YVKTGKCKFG VNCKFHHPKD ILVLSGAENG NSEQTLMEAK  240
IEGGIGDFKL VKPPVSFPPA LIHNSKGLPI RLGEVDCPFY LKTGSCKYGT SCRYNHPDRN  300
AINSCNATMV HPAMVSASNM NIGLVNPSNA IYQAINPRLI QPPLGSSSSI YPQRPGQIEC  360
DYYMKTGDCK FGERCKFHHP IDRSAPKQAA QQNVKLTLAG LPRREDAIIC PYYLKTATCK  420
YGSTCKFDHP PPGEVVAMAA IQTVQGKEGE ERIDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein