PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022147902.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 437aa MW: 48305.9 Da PI: 8.1386

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022147902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.7	6.1e-11	96	120	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_022147902.1 96 GEKDCAHYMLTRTCKFGDSCKFDHP 120 7889********************8 PP
2	zf-CCCH	36.1	1.1e-11	147	173	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G+rCkF+H++ XP_022147902.1 147 PGEPDCPYFLKTQRCKFGSRCKFNHPK 173 5789*********************96 PP
3	zf-CCCH	35.5	1.7e-11	195	219	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+G +CkF+H++ XP_022147902.1 195 EPLCAFYVKTGKCKFGVNCKFHHPK 219 79*********************96 PP
4	zf-CCCH	37.4	4.4e-12	274	297	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_022147902.1 274 EVDCPFYLKTGSCKYGTSCRYNHP 297 689********************9 PP
5	zf-CCCH	34.6	3.3e-11	344	362	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 ++++tG Ck+G+rCkF+H+ XP_022147902.1 344 YYMKTGDCKFGERCKFHHP 362 9*****************8 PP
6	zf-CCCH	35.2	2e-11	391	413	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++t tCkyG++CkF H+p XP_022147902.1 391 ICPYYLKTATCKYGSTCKFDHPP 413 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MYSTQKEALR LSAADIVPRT SHLVSQYSWS GTDVAAALDS VVSGVKRSSD VLYDQTVLGS 60 CNTLGQSEAW YTSNSLAKRP RFESTSNLPV YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP 120 IWVPEGGIPD WKEVPQIANN EDLPERPGEP DCPYFLKTQR CKFGSRCKFN HPKDRSDSVG 180 AEKSDVSALP ERPSEPLCAF YVKTGKCKFG VNCKFHHPKD ILVLSGAENG NSEQTLMEAK 240 IEGGIGDFKL VKPPVSFPPA LIHNSKGLPI RLGEVDCPFY LKTGSCKYGT SCRYNHPDRN 300 AINSCNATMV HPAMVSASNM NIGLVNPSNA IYQAINPRLI QPPYYMKTGD CKFGERCKFH 360 HPIDRSAPKQ AAQQNVKLTL AGLPRREDAI ICPYYLKTAT CKYGSTCKFD HPPPGEVVAM 420 AAIQTVQGKE GEERIDE

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MYSTQKEALR LSAADIVPRT SHLVSQYSWS GTDVAAALDS VVSGVKRSSD VLYDQTVLGS  60
CNTLGQSEAW YTSNSLAKRP RFESTSNLPV YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP  120
IWVPEGGIPD WKEVPQIANN EDLPERPGEP DCPYFLKTQR CKFGSRCKFN HPKDRSDSVG  180
AEKSDVSALP ERPSEPLCAF YVKTGKCKFG VNCKFHHPKD ILVLSGAENG NSEQTLMEAK  240
IEGGIGDFKL VKPPVSFPPA LIHNSKGLPI RLGEVDCPFY LKTGSCKYGT SCRYNHPDRN  300
AINSCNATMV HPAMVSASNM NIGLVNPSNA IYQAINPRLI QPPYYMKTGD CKFGERCKFH  360
HPIDRSAPKQ AAQQNVKLTL AGLPRREDAI ICPYYLKTAT CKYGSTCKFD HPPPGEVVAM  420
AAIQTVQGKE GEERIDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-176	C3H family protein