PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022148342.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 544aa    MW: 60650.5 Da    PI: 7.8103
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022148342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.66e-771565362374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL  cA+a+ +gd++++++l++ l+elasp+gd+++Rla + ++ALa++l++++s+ +++l p+ + ++++      +l  f+evsP++ + +
  XP_022148342.1 156 EQLLNPCANAIIKGDATRVHHLICVLQELASPTGDANHRLADHGLRALAHHLSSNSSSSSSTLaPVVNFASTDARFFQRSLIKFHEVSPWFALPN 250
                     689***************************************************88888888846666765555555555555************ PP

            GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpf 176
                      +aN+ Il  +++e    + +Hi+D+++s+G+QWp+Ll+aL+ R+ ++pp +R+T+v++  ++               ++ +rL +fA++l++++
  XP_022148342.1 251 NIANSSILHTLSEEpnlsRNLHILDIGVSHGVQWPTLLEALTRRSgGPPPLIRLTVVAPTVEHdqtaetpfsIGPPGDNISSRLLSFAKSLNINL 345
                     *************98888888************************55566*******9987777777777766677899**************** PP

            GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalf 268
                     ++n l  ++l++l+ + +   ++E l+V+ +++lh+l    +  ++er+e+L+ +++++P+ v+++e++  +++ n ++F   f++ +ey + ++
  XP_022148342.1 346 QINRLDNHSLQNLNSQVIGKFRDEILIVCAHFRLHQLK---HRAPDERTEFLRNLRKMEPNAVILSENNiaCSCsNCGNFDITFTRRVEYLWRFL 437
                     ****9999*****************************8...67777789********************766668999***************** PP

            GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                     ds+++ +    + r + Er++++ e+ ++++++g++    +e++ekW er+++aGF    + e + ++a++ +r+++ ++++r+ee++g++ l W
  XP_022148342.1 438 DSTSSAF----KGRESDERRVMEGEAAKALTNQGEM----NEEKEKWYERMRNAGFARKFFAEXTIDTARASMRRYDnNWEMRMEEKDGCVGLWW 524
                     ***6665....55555566666677999******99....89999********************************9999************** PP

            GRAS 363 kdrpLvsvSaWr 374
                     k++p+ ++S+W+
  XP_022148342.1 525 KGQPISFCSFWK 536
                     ***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MTIEEPGPNH PSDHILDWLE DSAPFFSPFL DETYNSSSIN CYQWWDESQN IGQDLINGCL  60
SSSPAAATTD STTPPNTTSL TPSDLSKKRK APDDTGHKTT QPHQNPRKNQ NNQSKNGADK  120
GGGGVVKKSV GNKKSSSKST GNNYNNGSNK EGRWAEQLLN PCANAIIKGD ATRVHHLICV  180
LQELASPTGD ANHRLADHGL RALAHHLSSN SSSSSSTLAP VVNFASTDAR FFQRSLIKFH  240
EVSPWFALPN NIANSSILHT LSEEPNLSRN LHILDIGVSH GVQWPTLLEA LTRRSGGPPP  300
LIRLTVVAPT VEHDQTAETP FSIGPPGDNI SSRLLSFAKS LNINLQINRL DNHSLQNLNS  360
QVIGKFRDEI LIVCAHFRLH QLKHRAPDER TEFLRNLRKM EPNAVILSEN NIACSCSNCG  420
NFDITFTRRV EYLWRFLDST SSAFKGRESD ERRVMEGEAA KALTNQGEMN EEKEKWYERM  480
RNAGFARKFF AEXTIDTARA SMRRYDNNWE MRMEEKDGCV GLWWKGQPIS FCSFWKLGAK  540
PNGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-153GRAS family protein