PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022148386.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 694aa MW: 75369.6 Da PI: 6.3515

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022148386.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.9e-07	263	283	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg XP_022148386.1 263 PCPEFRK-GTCRQGDACEYAHG 283 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MDSGLKHEGL GYNFSLLLEL SAKDDLIGFK KAVEEDGHDI DESSLWYGRI FGSKKMGYEE 60 RTPLIVAAMF GSMNVLSYIL RSGRVDVNRA CGSDGATALH CAVAGGSAIL DQVAKVLLDA 120 SADVNAVDAN GNRPGDLIAP AHTLAFYSRK KALQQLLNGA DESEETLGSS NKIFYERGVE 180 EPWEVSTARV SRDGTEKKEY PVDLSLPDIK NGIYSTDEFR MYTFKIKPCT RAYSHDWTEC 240 PFVHPGENAR RRDPRKYHYS CVPCPEFRKG TCRQGDACEY AHGIFECWLH PAQYRTRLCK 300 DETGCTRKVC FFAHKPEELR PLYASTGSAV VSPRSICGSS LDIASISSLT LGSPSAVIPP 360 SSTPPMTPSG VSSPMGGTLW QTQCNIAPPT LQLPGSRLKA AWSARDIDLD VELLGLENQR 420 RRQQQLMDEL SCLPSPSRWN SGLSTPASFP SPRSRNGEMN GLGGVNPTNL EDIFGSVDPA 480 TLSQLQGLSL DSVASQVQSP SGIQMRQNMN QSFLSRYANS IASPPARASQ PFGVDMSVSA 540 ATSVLSSRAA AFAKRSQSFI ERGAVNRHSG LSVSPPATSA TAMPLNNLSD WGSPDGKLDW 600 GIHGEELHKL RKSASIGLRG SCSSSLAITS AMHAAPAEPD VSWVQSLVKD APTKNAMRSS 660 TDEQQQLYHL NNGDSETVPT WVEQMYLEQE QLVA

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MDSGLKHEGL GYNFSLLLEL SAKDDLIGFK KAVEEDGHDI DESSLWYGRI FGSKKMGYEE  60
RTPLIVAAMF GSMNVLSYIL RSGRVDVNRA CGSDGATALH CAVAGGSAIL DQVAKVLLDA  120
SADVNAVDAN GNRPGDLIAP AHTLAFYSRK KALQQLLNGA DESEETLGSS NKIFYERGVE  180
EPWEVSTARV SRDGTEKKEY PVDLSLPDIK NGIYSTDEFR MYTFKIKPCT RAYSHDWTEC  240
PFVHPGENAR RRDPRKYHYS CVPCPEFRKG TCRQGDACEY AHGIFECWLH PAQYRTRLCK  300
DETGCTRKVC FFAHKPEELR PLYASTGSAV VSPRSICGSS LDIASISSLT LGSPSAVIPP  360
SSTPPMTPSG VSSPMGGTLW QTQCNIAPPT LQLPGSRLKA AWSARDIDLD VELLGLENQR  420
RRQQQLMDEL SCLPSPSRWN SGLSTPASFP SPRSRNGEMN GLGGVNPTNL EDIFGSVDPA  480
TLSQLQGLSL DSVASQVQSP SGIQMRQNMN QSFLSRYANS IASPPARASQ PFGVDMSVSA  540
ATSVLSSRAA AFAKRSQSFI ERGAVNRHSG LSVSPPATSA TAMPLNNLSD WGSPDGKLDW  600
GIHGEELHKL RKSASIGLRG SCSSSLAITS AMHAAPAEPD VSWVQSLVKD APTKNAMRSS  660
TDEQQQLYHL NNGDSETVPT WVEQMYLEQE QLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein