PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022148577.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MYB
Protein Properties Length: 296aa    MW: 33818.8 Da    PI: 6.4577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022148577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.1e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
   XP_022148577.1 15 KGPWTAEEDRKLVDYIEKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding55.31.5e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+e+++++++ lG++ W+ Ia++++ gRt++++k++w+++l
   XP_022148577.1  68 RGNFSDEEEEIIINLHAALGNK-WSIIASHLP-GRTDNEIKNFWNTHL 113
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MMPRSPSVDE NGLKKGPWTA EEDRKLVDYI EKHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGN FSDEEEEIII NLHAALGNKW SIIASHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHMPR TDHHLNILSN FHHLLSLPSA PWDSPFRLHS EATQLAKVHL LQNLLQILSS  180
HSSDHLFTSN SLFSGQQIPD PIYNLPIGSS LQSFQNLESS QQQPLSRDDY TTSSLGFGND  240
NDRVETFYDM NHSSDSLPNL VSVSPECSKI PTAIKDHWDD CMDDESSYSY WKHVEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-93MYB family protein