PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022148815.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 360aa MW: 40345.3 Da PI: 6.8263

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022148815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.2e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC++fa G C G+ C F+H+ XP_022148815.1 3 RRVLCKYFAH-GACLKGEYCEFSHD 26 689*6666.***********5 PP
2	zf-CCCH	25.4	2.4e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C +G+rC++ H+ XP_022148815.1 34 VCTFYQK-GRCAFGSRCRYDHV 54 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MSRRVLCKYF AHGACLKGEY CEFSHDWTDP SNNVCTFYQK GRCAFGSRCR YDHVKVSHAE 60 SSASSNSQQP IVSESVSVTR PLLSSQPSTL PGSTGELAGS EISCLPPQDE PAWGGQSEHH 120 PDDLDDWRDG ETRTDGPSDI PICSFIAGGG VCPRGENCPH IHGDICPTCG KQCLHPFRTD 180 EREEHMKACE KKQKHIEALK HSQDIECSVC LERVLSKSEL GERKFGILSE CDHPFCISCI 240 RNWRNSSSTS GMDVNNALRA CPICRKLSYF VIPSVIWYSS KEQKQEIVDS YKTRLRSIDC 300 KHFNFGNGNC PFGSSCFYKH AYRDGQLEEV VLRHIGNQDG LTVIAKDIRL SDFLSDLHIR

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MSRRVLCKYF AHGACLKGEY CEFSHDWTDP SNNVCTFYQK GRCAFGSRCR YDHVKVSHAE  60
SSASSNSQQP IVSESVSVTR PLLSSQPSTL PGSTGELAGS EISCLPPQDE PAWGGQSEHH  120
PDDLDDWRDG ETRTDGPSDI PICSFIAGGG VCPRGENCPH IHGDICPTCG KQCLHPFRTD  180
EREEHMKACE KKQKHIEALK HSQDIECSVC LERVLSKSEL GERKFGILSE CDHPFCISCI  240
RNWRNSSSTS GMDVNNALRA CPICRKLSYF VIPSVIWYSS KEQKQEIVDS YKTRLRSIDC  300
KHFNFGNGNC PFGSSCFYKH AYRDGQLEEV VLRHIGNQDG LTVIAKDIRL SDFLSDLHIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-156	C3H family protein