PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022149102.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

YABBY

Protein Properties

Length: 173aa MW: 18929.3 Da PI: 8.7002

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022149102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	151	1.1e-46	10	157	1	163
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +d+++ se++Cyv+CnfCnt+lav +P l+ +vtv+CGhC++l ++ + l+ + + + l+++++ sn++++ ++++s XP_022149102.1 10 MDLVQPSEHLCYVRCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPP---------LQG---QCIDHPLGFQTQVGFSNDIRKGASTSS 92 578999***********************************9755333322.........222...234556778888778888888887777 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 +s+ s++ +e+p + v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa + XP_022149102.1 93 TST---SSSMANESPSPSFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 157 777...6677888898888*********************************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MSSEDSKTSM DLVQPSEHLC YVRCNFCNTV LAVGIPCRRL LDTVTVKCGH CSNLSFLSTR 60 PPLQGQCIDH PLGFQTQVGF SNDIRKGAST SSTSTSSSMA NESPSPSFVV KPPEKKHRLP 120 SAYNRFMKEE IQRIKAANPE IPHREAFSAA AKNWARYIPN SAAGSVSGTH NNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	5e-68	YABBY family protein