PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022149278.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB_related

Protein Properties

Length: 624aa MW: 68563.9 Da PI: 5.727

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022149278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.2e-08	504	552	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l XP_022149278.1 504 AWTLVEVIKLVEGVSKCGAGRWSEIKRLAFssySYRTSVDLKDKWRNLL 552 7*************************99999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
METVVGFVEN GGNIEEGRVA LDDSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE 60 DLIEDDKSEK IADAGQIVGC VPTEGALFGK PHLEISNGLS QSETFEADAG YNARLEYIEE 120 VLQKVKEEER LRLACGSPNH ASAYVNGDRK CSDQHGRLPV IDEKLQSKIS QQEIAHSISP 180 SLNENHVNEH ESLGDCLKHP DELVESESSD AVGTTSNPDF SLLKGEICLD NLSIRELHEY 240 FRATFGRETT VKDKSWLKRR IAMGLTNSCD IPPSSFIIRE GKFVAGGMEE CSQNVEGMSN 300 VPLVKALNIE CKGSPTTHSW ENKNHSCIAD MELDHGSKDR LDEERAAVKR IRKPTRRYIE 360 ELSEVELREH GQKGASLYKN APSDGTSSSS IARPIKKIIS SDGGRTIITR MDTLGGSGFQ 420 VPCVSRVRRS RPRKDIEALL FAPPDKDQNP SVKDTDQNTS VMDTEEVEKN LEPKLTASGN 480 NASDDNAAIV PTSKGGMRRK HHRAWTLVEV IKLVEGVSKC GAGRWSEIKR LAFSSYSYRT 540 SVDLKDKWRN LLKASSAQTP VDEVVSSRKH VSVSIPAQIL LRVRELAEMH AQIASNHHHG 600 PAVAAAAAGV TPTNMHEMTS AVCL

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

METVVGFVEN GGNIEEGRVA LDDSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE  60
DLIEDDKSEK IADAGQIVGC VPTEGALFGK PHLEISNGLS QSETFEADAG YNARLEYIEE  120
VLQKVKEEER LRLACGSPNH ASAYVNGDRK CSDQHGRLPV IDEKLQSKIS QQEIAHSISP  180
SLNENHVNEH ESLGDCLKHP DELVESESSD AVGTTSNPDF SLLKGEICLD NLSIRELHEY  240
FRATFGRETT VKDKSWLKRR IAMGLTNSCD IPPSSFIIRE GKFVAGGMEE CSQNVEGMSN  300
VPLVKALNIE CKGSPTTHSW ENKNHSCIAD MELDHGSKDR LDEERAAVKR IRKPTRRYIE  360
ELSEVELREH GQKGASLYKN APSDGTSSSS IARPIKKIIS SDGGRTIITR MDTLGGSGFQ  420
VPCVSRVRRS RPRKDIEALL FAPPDKDQNP SVKDTDQNTS VMDTEEVEKN LEPKLTASGN  480
NASDDNAAIV PTSKGGMRRK HHRAWTLVEV IKLVEGVSKC GAGRWSEIKR LAFSSYSYRT  540
SVDLKDKWRN LLKASSAQTP VDEVVSSRKH VSVSIPAQIL LRVRELAEMH AQIASNHHHG  600
PAVAAAAAGV TPTNMHEMTS AVCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	428	434	RRSRPRK
2	428	435	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-112	MYB_related family protein