PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022149287.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB_related

Protein Properties

Length: 614aa MW: 67542.7 Da PI: 5.54

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022149287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3.2e-08	494	542	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l XP_022149287.1 494 AWTLVEVIKLVEGVSKCGAGRWSEIKRLAFssySYRTSVDLKDKWRNLL 542 7*************************99999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
METVVGFVEN GGNIEEGRVA LDDSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE 60 DLIEDDKSEK IADAGQIVGC VPTEDMPGLS QSETFEADAG YNARLEYIEE VLQKVKEEER 120 LRLACGSPNH ASAYVNGDRK CSDQHGRLPV IDEKLQSKIS QQEIAHSISP SLNENHVNEH 180 ESLGDCLKHP DELVESESSD AVGTTSNPDF SLLKGEICLD NLSIRELHEY FRATFGRETT 240 VKDKSWLKRR IAMGLTNSCD IPPSSFIIRE GKFVAGGMEE CSQNVEGMSN VPLVKALNIE 300 CKGSPTTHSW ENKNHSCIAD MELDHGSKDR LDEERAAVKR IRKPTRRYIE ELSEVELREH 360 GQKGASLYKN APSDGTSSSS IARPIKKIIS SDGGRTIITR MDTLGGSGFQ VPCVSRVRRS 420 RPRKDIEALL FAPPDKDQNP SVKDTDQNTS VMDTEEVEKN LEPKLTASGN NASDDNAAIV 480 PTSKGGMRRK HHRAWTLVEV IKLVEGVSKC GAGRWSEIKR LAFSSYSYRT SVDLKDKWRN 540 LLKASSAQTP VDEVVSSRKH VSVSIPAQIL LRVRELAEMH AQIASNHHHG PAVAAAAAGV 600 TPTNMHEMTS AVCL

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

METVVGFVEN GGNIEEGRVA LDDSTLSPNQ IADPVVYKLV RVDGDGRFVP ATDDEVMEVE  60
DLIEDDKSEK IADAGQIVGC VPTEDMPGLS QSETFEADAG YNARLEYIEE VLQKVKEEER  120
LRLACGSPNH ASAYVNGDRK CSDQHGRLPV IDEKLQSKIS QQEIAHSISP SLNENHVNEH  180
ESLGDCLKHP DELVESESSD AVGTTSNPDF SLLKGEICLD NLSIRELHEY FRATFGRETT  240
VKDKSWLKRR IAMGLTNSCD IPPSSFIIRE GKFVAGGMEE CSQNVEGMSN VPLVKALNIE  300
CKGSPTTHSW ENKNHSCIAD MELDHGSKDR LDEERAAVKR IRKPTRRYIE ELSEVELREH  360
GQKGASLYKN APSDGTSSSS IARPIKKIIS SDGGRTIITR MDTLGGSGFQ VPCVSRVRRS  420
RPRKDIEALL FAPPDKDQNP SVKDTDQNTS VMDTEEVEKN LEPKLTASGN NASDDNAAIV  480
PTSKGGMRRK HHRAWTLVEV IKLVEGVSKC GAGRWSEIKR LAFSSYSYRT SVDLKDKWRN  540
LLKASSAQTP VDEVVSSRKH VSVSIPAQIL LRVRELAEMH AQIASNHHHG PAVAAAAAGV  600
TPTNMHEMTS AVCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	418	424	RRSRPRK
2	418	425	RRSRPRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-113	MYB_related family protein