PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022149992.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25667.4 Da    PI: 9.8438
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022149992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.7e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  XP_022149992.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                    79***********************************************95 PP
2K-box110.32e-36761733100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +s ++s++e +++++qqe+akL+++i++Lq+++Rhl+G++L+ L++keL+qLe++Le+++++iRskK+e+ll++ie+lqk+e el++en ++r+k
  XP_022149992.1  76 SSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTK 170
                     45566699*************************************************************************************** PP

           K-box  98 lee 100
                     ++e
  XP_022149992.1 171 IAE 173
                     986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
SIKTTIERYK KACSDSSATS SVTELNTQYY QQESAKLRQQ IQMLQNSNRH LMGDSLSALT  120
VKELKQLENR LERGITRIRS KKHEMLLAEI EYLQKREIEL ENENVCIRTK IAEVERLQQA  180
NMVSGQELNA IQALASRNFF TPNMMEGGAV TFSHQDKKML HLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-122MIKC_MADS family protein