PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022152324.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25259.1 Da    PI: 10.2962
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022152324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-1969123256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q + Lee F+ n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  XP_022152324.1  69 RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK 123
                     788899***********************************************98 PP
2HD-ZIP_I/II115.24e-3769158191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q++lLEesF+ +++L+p++K++la eL+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+++n+rL+ e eeLr ++
  XP_022152324.1  69 RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGTLTDQNRRLRLELEELR-AI 158
                     69*************************************************************************************9.44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAVSPINSSS LELSISMPGF ASSPARPSFA RELDMNRVPA GAVAEEEWAV ALSTEEEEEE  60
SSANGGRPRK KLRLSKDQSR LLEESFRLNH TLNPKQKEAL AMELKLKPRQ VEVWFQNRRA  120
RSKLKQTEME CEYLKRWFGT LTDQNRRLRL ELEELRAIKV APPALISAPT RQPTLPASTV  180
TMCPHCERVT AASIISGKAA APATAVTATM PSKALLTAHK LRRPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773RPRKKLR
2118126RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-58HD-ZIP family protein