PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022152603.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 28309.3 Da PI: 6.3702

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022152603.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.4	3.8e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss XP_022152603.1 9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59 79***********************************************96 PP
2	K-box	63.2	1e-21	86	170	14	100
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ ++e++ L++ei +Lq +q +llG+dL+ L +keLq+LeqqL+++l +++kK++ll+eq+e+++ e+++ en++Lr++++e XP_022152603.1 86 EKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLMVKEKKEQLLMEQLEQSR--EQRAMLENETLRRQVNE 170 456789**********************************************************9765..66666678899998865 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSS 60 GMKHTLSRYN RCVDSSEAAV DGRKVEKQEH EEVDILRDEI TTLQMKQLQL LGKDLTGLGF 120 KELQNLEQQL NEGLLMVKEK KEQLLMEQLE QSREQRAMLE NETLRRQVNE LRCLFPPVDC 180 PLPAYLEYCS LEQKNIGLRS PDAACNSEIE RGDSDTTLHL GLPSHVYCKR KEAERDTHSN 240 NSGSQMGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-68	MIKC_MADS family protein