PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022152605.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28052.1 Da    PI: 6.6676
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022152605.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  XP_022152605.1  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                    79***********************************************96 PP
2K-box52.42.3e-188616814100
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++ ++e++ L++ei +Lq +q +llG+dL+ L +keLq+LeqqL+++l  +++kK  ll+eq+e+++  e+++  en++Lr++++e
  XP_022152605.1  86 EKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLMVKEKK--LLMEQLEQSR--EQRAMLENETLRRQVNE 168
                     456789***********************************************997..9*****9765..66666778899998865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSS  60
GMKHTLSRYN RCVDSSEAAV DGRKVEKQEH EEVDILRDEI TTLQMKQLQL LGKDLTGLGF  120
KELQNLEQQL NEGLLMVKEK KLLMEQLEQS REQRAMLENE TLRRQVNELR CLFPPVDCPL  180
PAYLEYCSLE QKNIGLRSPD AACNSEIERG DSDTTLHLGL PSHVYCKRKE AERDTHSNNS  240
GSQMGLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.17e-67MIKC_MADS family protein