PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022152630.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 726aa MW: 79453.1 Da PI: 6.4179

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022152630.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	304	324	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022152630.1 304 PCPDFRK-GACRRGDMCEYAHG 324 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MCGGPEQSNS ASTTSSASSP NPKDMNHLAV DCEDSFYSLL ELASDNDVEG FKRLMDSDLL 60 SLNKSGLWYV RQKGSKQVVH EHRTPLMVAA TYGCVDVLKL ILSFPEVDVN LSSGTDKSTA 120 LHCAASSGSV NAVDIVDMLL SAGADPSSKD VNGDRPVDVI FVHPKLQKQN TRFRLEELLN 180 NHASNGSMDV SCLHLSIKTP DSESPSLSSS LEDEFPSPPK SMSSPKFTDG FANSTKEKKE 240 YPIDPSLPDI KNSIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY 300 SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV CFFAHTNEEL 360 RPLYVSTGSA VPSPRSIGSA PTVMDMATAL GLLPGSPSSV SALSPSPFAQ SMSPSSNGVS 420 HASMNWQQPN VPTLHLPGSN LQSSRLRSSL NARDMPLEDL NVLPDFDNQP RMLNDMNCFS 480 QPRPSAVSVS RSCWTQTLTP NNLEELFSSE ISSSPRFSDP ATNVFSPTRK STLLNQFQQQ 540 QNMLSPINTS IMSPKNVDHP LLQASFGVSS PGRMSPRSTE PPSPMGSRFS AFVQREKQQH 600 LRTLSSRELG SNVLSSLIGS PVSSLPKWGS PNGKVDWSVG KSELGQLQRS SSFEIGNNGE 660 EPDLSWVQSL VKESPPEMLK EKLAAPGMGA AASGEDLNTT KSQLESSDHS VIGAWLEQMQ 720 LDQLVV

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MCGGPEQSNS ASTTSSASSP NPKDMNHLAV DCEDSFYSLL ELASDNDVEG FKRLMDSDLL  60
SLNKSGLWYV RQKGSKQVVH EHRTPLMVAA TYGCVDVLKL ILSFPEVDVN LSSGTDKSTA  120
LHCAASSGSV NAVDIVDMLL SAGADPSSKD VNGDRPVDVI FVHPKLQKQN TRFRLEELLN  180
NHASNGSMDV SCLHLSIKTP DSESPSLSSS LEDEFPSPPK SMSSPKFTDG FANSTKEKKE  240
YPIDPSLPDI KNSIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY  300
SCVPCPDFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV CFFAHTNEEL  360
RPLYVSTGSA VPSPRSIGSA PTVMDMATAL GLLPGSPSSV SALSPSPFAQ SMSPSSNGVS  420
HASMNWQQPN VPTLHLPGSN LQSSRLRSSL NARDMPLEDL NVLPDFDNQP RMLNDMNCFS  480
QPRPSAVSVS RSCWTQTLTP NNLEELFSSE ISSSPRFSDP ATNVFSPTRK STLLNQFQQQ  540
QNMLSPINTS IMSPKNVDHP LLQASFGVSS PGRMSPRSTE PPSPMGSRFS AFVQREKQQH  600
LRTLSSRELG SNVLSSLIGS PVSSLPKWGS PNGKVDWSVG KSELGQLQRS SSFEIGNNGE  660
EPDLSWVQSL VKESPPEMLK EKLAAPGMGA AASGEDLNTT KSQLESSDHS VIGAWLEQMQ  720
LDQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein