PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022152812.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family LBD
Protein Properties Length: 206aa    MW: 22533.9 Da    PI: 8.0013
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022152812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.52.2e-3891091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p+ +r da  +l+yeA ar+rdPvyG+v +i++lqqq+ +l+ael
  XP_022152812.1   9 PCGACKFLRRKCVKGCIFAPYFDSDQgAAHFAAVHKVFGASNASKLLLRIPPPKRLDACVTLCYEALARVRDPVYGCVPHIFSLQQQVVSLQAEL 103
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_022152812.1 104 AYIQAR 109
                     *99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MSGSHGGGPC GACKFLRRKC VKGCIFAPYF DSDQGAAHFA AVHKVFGASN ASKLLLRIPP  60
PKRLDACVTL CYEALARVRD PVYGCVPHIF SLQQQVVSLQ AELAYIQARL STLQRLLPRP  120
LHSPSPTARP TSLPETGSGS DMDLLSNVPM LLDPLQIQPH NYGETTSFLN PIDQELDEDG  180
DLQSLAREFV SRYLPGVRFR PPCSQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-59LBD family protein