PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022153999.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family YABBY
Protein Properties Length: 224aa    MW: 24846.2 Da    PI: 8.1609
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022153999.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY212.61.3e-65221867169
           YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.....lleelkveeenlksnvekeesastsv 96 
                      +q+Cyv+Cn C+t+l vsvP +slfk+vtvrCGhCt+ll vn+     ll+++++++   + +      +++   e +n + n  +   ++t+ 
  XP_022153999.1  22 LDQLCYVHCNICDTVLGVSVPPASLFKTVTVRCGHCTNLLPVNMPP---LLPSTDQFHGFARSPaffplNTHNFLEEISNPNPN-PNLVMNQTDG 112
                     59***************************************99876...56777776555544445543222222222222222.2222333444 PP

           YABBY  97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                     +  ++ +   +++pr+pp ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+i fg
  XP_022153999.1 113 NDLTMATRVANDIPRQPPtINRPPEKRQRVPSAYNRFIKDEIQRIKTVNPDISHREAFSAAAKNWAHFPHINFG 186
                     45566889999****99989****************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSSSSLPTTF SQLSPSLPSP PLDQLCYVHC NICDTVLGVS VPPASLFKTV TVRCGHCTNL  60
LPVNMPPLLP STDQFHGFAR SPAFFPLNTH NFLEEISNPN PNPNLVMNQT DGNDLTMATR  120
VANDIPRQPP TINRPPEKRQ RVPSAYNRFI KDEIQRIKTV NPDISHREAF SAAAKNWAHF  180
PHINFGVPPH RTAKKTNMLH QEGDDVTLKD DRFLGSTNMG VSPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.15e-57YABBY family protein