PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022154705.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 1111aa MW: 123545 Da PI: 6.543

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022154705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.1	3.5e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_022154705.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217 99***************************9545444.38**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_022154705.1 218 SQLLLGIRRA 227 7789999997 PP
2	Auxin_resp	123.9	1.1e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d++rW+nS+Wr+L+ XP_022154705.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSLRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1111 aa Download sequence
MKAPPNGFLA NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE 60 TDFIPNYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VTKYEKEALL ASDIGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDM DSLRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWFGDD FGLKDTPSSI FPGLSLVQWM 420 SMQHTNQFPA AQSGILPSMV APSALHGTLT NDDPSKLLSF QAPVLSSPNL QFSKANQQNQ 480 VGQLPPTTWS QQQQLQQLLQ VPASQQLQHQ QQLPPQQELQ QQQLQSQQLP QQQQLHSQQL 540 PQQPQRQQQT SPSALLNNGV SAANHLPNQS LQQPLVYSQL QQRQLLAGNI QSHQTSQPSN 600 KNSFQTTSLS QETQFQPQIE QQPSLLPRQQ QQQQTQFQQA PLQLLQQSLS QRPQQQPQVP 660 QFSQPIPSEQ LQLQLLQKLQ QQQQHQQQQP LLSPATSLLP PQLLQQQHVH QQNQQLPPLP 720 LSNQQQFNAN GGSFPTEKLN SNGFSSLGLM QSQQVPITQS HNQFKPTIRA YSGLTDGDAP 780 SCSTSPSTNN CQVSVSNLLN KNQQVAATLG GDSVVEPATN LAQELQSKPD LRIKPEFPNS 840 KGSDQLKYKG TVPDQLEASS SGTSYCLDAG TIQQTFPLPT CLDNDVQSHP RNNIPFSNSI 900 DGLAPDTLLS RGYDSQKDLQ NLLSNYGGGV PRDIETELST AAISSQSFGV PNLPFKPGCS 960 NDVNVNEAGA LSSGLWANHS QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI 1020 EGQLEDPQRT DWKLVYVDHE NDILLVGDDP WDEFVSCVQS IKILSSAEVQ QMSLDGDLGH 1080 IQAPNQACSG TDSGNAWRGQ YDDNSAASFN R

Sequence ? help Back to Top

Protein Sequence Length: 1111 aa Download sequence

MKAPPNGFLA NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE  60
TDFIPNYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VTKYEKEALL ASDIGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DSLRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWFGDD FGLKDTPSSI FPGLSLVQWM  420
SMQHTNQFPA AQSGILPSMV APSALHGTLT NDDPSKLLSF QAPVLSSPNL QFSKANQQNQ  480
VGQLPPTTWS QQQQLQQLLQ VPASQQLQHQ QQLPPQQELQ QQQLQSQQLP QQQQLHSQQL  540
PQQPQRQQQT SPSALLNNGV SAANHLPNQS LQQPLVYSQL QQRQLLAGNI QSHQTSQPSN  600
KNSFQTTSLS QETQFQPQIE QQPSLLPRQQ QQQQTQFQQA PLQLLQQSLS QRPQQQPQVP  660
QFSQPIPSEQ LQLQLLQKLQ QQQQHQQQQP LLSPATSLLP PQLLQQQHVH QQNQQLPPLP  720
LSNQQQFNAN GGSFPTEKLN SNGFSSLGLM QSQQVPITQS HNQFKPTIRA YSGLTDGDAP  780
SCSTSPSTNN CQVSVSNLLN KNQQVAATLG GDSVVEPATN LAQELQSKPD LRIKPEFPNS  840
KGSDQLKYKG TVPDQLEASS SGTSYCLDAG TIQQTFPLPT CLDNDVQSHP RNNIPFSNSI  900
DGLAPDTLLS RGYDSQKDLQ NLLSNYGGGV PRDIETELST AAISSQSFGV PNLPFKPGCS  960
NDVNVNEAGA LSSGLWANHS QRMRTYTKVQ KRGSVGRCID VTRYKGYDEL RHDLARMFGI  1020
EGQLEDPQRT DWKLVYVDHE NDILLVGDDP WDEFVSCVQS IKILSSAEVQ QMSLDGDLGH  1080
IQAPNQACSG TDSGNAWRGQ YDDNSAASFN R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein