PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022154735.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 491aa MW: 52915.2 Da PI: 9.0795

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022154735.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022154735.1 82 FVCEICNKGFQRDQNLQLHRRGH 104 89*******************88 PP
2	zf-C2H2	11.3	0.0011	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_022154735.1 159 WKCDKCSKKYAVQSDWKAHSKIC 181 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MMMKGNFLAM DENLSNLTSA SGEPTPSVSS ANNKTDFPNQ YFDPQAHPPP PPKKKRNLPG 60 NPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKEVIR 120 KKVYVCPEGS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI 180 CGTKEYRCDC GTLFSRRDSF ITHRAFCDAL ADESARSAMA LNPLLSSYNN NINPQDHPIS 240 NNIFSLKTDL NNNNNNNNIM SAGEIIPPWL HPSADQDQAQ ARTVNPNPNL NPSHNPSHGH 300 GGGVSVGVGY GQSNSSVSSP HISATALLQK AAQMGATMSS TTTTSGSIPR PHNLLHVSTT 360 GNYGEINLRS REGEMGRGGG AVSCSSSSCT EYGNKAVSAS ASASASAPTF LQHMINSASA 420 SASASVFLQD SPFHDAAAFA SAAGGGRSEG LTRDFLGLRP LSHGDILTIA GFGNCILPTT 480 HHSQIHKPWQ G

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MMMKGNFLAM DENLSNLTSA SGEPTPSVSS ANNKTDFPNQ YFDPQAHPPP PPKKKRNLPG  60
NPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSNKEVIR  120
KKVYVCPEGS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI  180
CGTKEYRCDC GTLFSRRDSF ITHRAFCDAL ADESARSAMA LNPLLSSYNN NINPQDHPIS  240
NNIFSLKTDL NNNNNNNNIM SAGEIIPPWL HPSADQDQAQ ARTVNPNPNL NPSHNPSHGH  300
GGGVSVGVGY GQSNSSVSSP HISATALLQK AAQMGATMSS TTTTSGSIPR PHNLLHVSTT  360
GNYGEINLRS REGEMGRGGG AVSCSSSSCT EYGNKAVSAS ASASASAPTF LQHMINSASA  420
SASASVFLQD SPFHDAAAFA SAAGGGRSEG LTRDFLGLRP LSHGDILTIA GFGNCILPTT  480
HHSQIHKPWQ G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	122	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	C2H2 family protein