PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022156602.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family LBD
Protein Properties Length: 201aa    MW: 21980 Da    PI: 5.9144
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022156602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.63.6e-37111111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +e  +++f +vhk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a++
  XP_022156602.1  11 PCGACKFLRRKCVNGCIFAPYFRHELgTSHFSAVHKVFGASNASKLLAHLPVSHRCEAAITISYEAQARLQDPIYGCVSHIFTLQQQVLNLRAQV 105
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+l+e+
  XP_022156602.1 106 AYLREQ 111
                     *99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MAASASSSSS PCGACKFLRR KCVNGCIFAP YFRHELGTSH FSAVHKVFGA SNASKLLAHL  60
PVSHRCEAAI TISYEAQARL QDPIYGCVSH IFTLQQQVLN LRAQVAYLRE QAAQILLNNY  120
TIRNPNELLY GKSPFSGDPL QDLQSWLLAE DRSAAAPEFE PAAVPFVEMS LADPNVAGDC  180
CCEEIIVDRS IFSLDVQING E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-63LBD family protein