PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022156801.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family MYB
Protein Properties Length: 260aa    MW: 29349.2 Da    PI: 7.6182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022156801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-162370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++ +G g+W+  a+  g++Rt+k+c++rw++yl
   XP_022156801.1 23 RGPWTIEEDTLLIHYIAGHGEGQWNILAKQAGLKRTGKSCRLRWLNYL 70
                     89********************************************97 PP
2Myb_DNA-binding47.25e-1576119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_022156801.1  76 RGNLTLQEQLLILELHSKWGNR-WSKIAQQLP-GRTDNEIKNFWRT 119
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MEAVRKSLSN RPISGEEISE LRRGPWTIEE DTLLIHYIAG HGEGQWNILA KQAGLKRTGK  60
SCRLRWLNYL KPDVKRGNLT LQEQLLILEL HSKWGNRWSK IAQQLPGRTD NEIKNFWRTR  120
VQKQARQLKI EANNRRFLDV IRHLNVLEAM DDPTSNSFNF PPPSLHNTSL PNSSETTHLP  180
ANHGGGGAAS PPGSVQWPEI VSAWPPSPCG EFVEKKQEPF CALGGWDGVA GCNAQTVAPD  240
WLLEDAMLEN LWNNLDHNFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-61MYB family protein