PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022156885.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 687aa MW: 74420.8 Da PI: 6.9963

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022156885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	275	295	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_022156885.1 275 PCPEFRK-GACQKGDSCEYAHG 295 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MCSGSKNKGA SSDPAMEAKF QKLNDGGFFS ASSILLELSA SDDVEGFKRE VEEKGLDVDE 60 PSCWYGRGIG SKKMGFEKRT PLMIAAMFGS SKVVKHIIET GKADVNRACG SDMATALHCA 120 TAGGSGSSLE TIKLLLDGSA DVECVDASGR KPVDLIVSAY RMVCNSGRKA MEMLLRGDGV 180 AGEGDLSLYL DEDQQKITAS QSAKEGTDKK EYPVDVSLPD INSGIYGTDD FRMYTFKVKP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YSCVPCPEFR KGACQKGDSC EYAHGVFESW 300 LHPAQYRTRL CKDETGCTRK VCFFAHKPEE LRPVYASTGS GMPSPRSLSS SAGDMSTMSP 360 LALGSSSLSL PTTSTPPMSP LASVSSPKNG SLWQNKINLT PPALQLPGSR LKSALSARDL 420 DLEMELLGLE KNASQLQHQQ QLIDEISRLS SPSYWSGDVS RSAELKPSNL DDMFGSLDSS 480 LLSQFQGASL RTPISAQVQS PTGLQIRQNM NQLRASYPAN LSSSPVKKPP SFGFDSSSAV 540 AAAVMNSRSA AFAKRSQSFI DRAAVTRLPG LTAAANSAAK MSSHLSDWSS PDGKLDWGMH 600 GNDLNKLRKS ASFGIRNNGL GAPSFTPSAA EEPDVSWVNS LVKDVPSNSF EMFGAEKRQY 660 NLKREVNEML PSWMEQQLYA EQEQIVA

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MCSGSKNKGA SSDPAMEAKF QKLNDGGFFS ASSILLELSA SDDVEGFKRE VEEKGLDVDE  60
PSCWYGRGIG SKKMGFEKRT PLMIAAMFGS SKVVKHIIET GKADVNRACG SDMATALHCA  120
TAGGSGSSLE TIKLLLDGSA DVECVDASGR KPVDLIVSAY RMVCNSGRKA MEMLLRGDGV  180
AGEGDLSLYL DEDQQKITAS QSAKEGTDKK EYPVDVSLPD INSGIYGTDD FRMYTFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YSCVPCPEFR KGACQKGDSC EYAHGVFESW  300
LHPAQYRTRL CKDETGCTRK VCFFAHKPEE LRPVYASTGS GMPSPRSLSS SAGDMSTMSP  360
LALGSSSLSL PTTSTPPMSP LASVSSPKNG SLWQNKINLT PPALQLPGSR LKSALSARDL  420
DLEMELLGLE KNASQLQHQQ QLIDEISRLS SPSYWSGDVS RSAELKPSNL DDMFGSLDSS  480
LLSQFQGASL RTPISAQVQS PTGLQIRQNM NQLRASYPAN LSSSPVKKPP SFGFDSSSAV  540
AAAVMNSRSA AFAKRSQSFI DRAAVTRLPG LTAAANSAAK MSSHLSDWSS PDGKLDWGMH  600
GNDLNKLRKS ASFGIRNNGL GAPSFTPSAA EEPDVSWVNS LVKDVPSNSF EMFGAEKRQY  660
NLKREVNEML PSWMEQQLYA EQEQIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein