PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022156987.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 688aa MW: 76862.2 Da PI: 6.3949

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022156987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.7	5.4e-24	129	230	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_022156987.1 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQDLIAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGD 219 99**************************9543..445568********************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+v+v+r+ XP_022156987.1 220 NGELRVGVRRR 230 9999***97 PP
2	Auxin_resp	99.4	5e-33	255	333	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g +d++p +W+nS WrsL XP_022156987.1 255 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGAEDISP-HWHNSSWRSL 333 689*************6..89******************************************99.*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MSYHGGDSFA QSCVSAQGCG RDDLYMELWR ACAGPLVDVP RVDERVFYFP QGHMEQLEAS 60 TNLELNKRIP VFNLSSKILC RVIHIESLAD RETDEVYAQI TLMPESNQSE PNSLDPCPPE 120 PARPVVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQATPTQDLI AKDLHGFEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLSAG DSFVFLRGDN GELRVGVRRR ARQLTSMPSS 240 VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNNK FSVGMRFNMS 300 FEGEDSPERR FSGTIIGAED ISPHWHNSSW RSLRVQWDEQ TTIPRPDRVS PWDIEPLTSS 360 AATNLTQPVA KNKRPRQPTE TALDGADFTK PALWDSGLAQ PHDGKQCSNA AESRKGENNE 420 LCQHRETDTI SISTCVSRTQ TDGAWLSSTQ SNSHKHPVND MALDYKTVSG CGWSFLSGPT 480 PPSNSLVKLS DDQILDPTEN GRKGETVASC RLFGIDLNHL ARLPAEKASS QLSSVSSETE 540 GRISTLSVAH SDKKSDILEV SIERTSEPLQ ASLKESQSNQ SSSTNTRSRT KVHMHGMAVG 600 RAVDLTILEG YDQLIDELEK MFDVRGQLCA RDKWEIVYTD DEGDIMLVGD DPWEEFCNMV 660 RRIFICSREQ VKKMSSRSKQ LPSEVEEA

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MSYHGGDSFA QSCVSAQGCG RDDLYMELWR ACAGPLVDVP RVDERVFYFP QGHMEQLEAS  60
TNLELNKRIP VFNLSSKILC RVIHIESLAD RETDEVYAQI TLMPESNQSE PNSLDPCPPE  120
PARPVVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQATPTQDLI AKDLHGFEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLSAG DSFVFLRGDN GELRVGVRRR ARQLTSMPSS  240
VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNNK FSVGMRFNMS  300
FEGEDSPERR FSGTIIGAED ISPHWHNSSW RSLRVQWDEQ TTIPRPDRVS PWDIEPLTSS  360
AATNLTQPVA KNKRPRQPTE TALDGADFTK PALWDSGLAQ PHDGKQCSNA AESRKGENNE  420
LCQHRETDTI SISTCVSRTQ TDGAWLSSTQ SNSHKHPVND MALDYKTVSG CGWSFLSGPT  480
PPSNSLVKLS DDQILDPTEN GRKGETVASC RLFGIDLNHL ARLPAEKASS QLSSVSSETE  540
GRISTLSVAH SDKKSDILEV SIERTSEPLQ ASLKESQSNQ SSSTNTRSRT KVHMHGMAVG  600
RAVDLTILEG YDQLIDELEK MFDVRGQLCA RDKWEIVYTD DEGDIMLVGD DPWEEFCNMV  660
RRIFICSREQ VKKMSSRSKQ LPSEVEEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein