PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022157228.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family Whirly
Protein Properties Length: 248aa    MW: 27566.6 Da    PI: 10.3877
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022157228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1851.4e-57682032137
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     vyk+ka +++ + +ptf++ldsgnl+++r+G+++l++ +a++erkydW kkq f+lsate+++l++l++++sceffhdp++ +s +G+vrk+l +
  XP_022157228.1  68 VYKGKAGVSMMPCLPTFTKLDSGNLVISRRGSVMLTFFPAIGERKYDWTKKQLFSLSATEIGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTI 162
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     + ++dG G+f++l+v n++++++e +svP + +ef+v++++
  XP_022157228.1 163 KSHADGNGYFISLNVVNNMQNTKEFLSVPFTAGEFSVMKTA 203
                     ***************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGKFTPFLIS RRLNQLFEQI VCKKSGNVGH PFGSHSFSSR VGIPDSRQNF TQTVTKNAGD  60
RVYASYNVYK GKAGVSMMPC LPTFTKLDSG NLVISRRGSV MLTFFPAIGE RKYDWTKKQL  120
FSLSATEIGT LISLGPRDSC EFFHDPGMLS STAGQVRKSL TIKSHADGNG YFISLNVVNN  180
MQNTKEFLSV PFTAGEFSVM KTACSVKHHH FDRTPTILKD KRIYKLQNNP SIRVCPAAHS  240
WLGPADQT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-67Whirly family protein