PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022158467.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family HD-ZIP
Protein Properties Length: 246aa    MW: 27453.8 Da    PI: 6.7755
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022158467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-19124178256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tk+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  XP_022158467.1 124 RKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 178
                     78889************************************************98 PP
2HD-ZIP_I/II1309.5e-42124213191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+k+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  XP_022158467.1 124 RKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVAELR-AL 213
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MMAAKDDLGL SLGLSFHSHR LASDHHLQLN LMPSPWNNDA TSFPSSSDRT SETGRSLLRG  60
IDVNRIPATA ADCEDEAAMS SPNSTVSSVS GKRSEREEAN GEDLDGDRAC SRGISDEEDG  120
ETSRKKLRLT KDQSAVLEES FKEHNTLNPK QKLALAKQLG LRPRQVEVWF QNRRARTKLK  180
QTEVDCEFLK RCCENLTEEN RRLQKEVAEL RALKLSPQLY MHMTPPTTLT MCPSCERVAV  240
PPSTSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129SRKKLRL
2173181RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-92HD-ZIP family protein