PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022158473.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

MYB

Protein Properties

Length: 501aa MW: 55581.6 Da PI: 7.6441

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022158473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl XP_022158473.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	52.4	1.3e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ XP_022158473.1 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPN 120 SVSSTVTAAX TTAANNTEHS QLSSSNPHQL NFLTQDLTTK HLSLHRETLF PIPAVSCPGL 180 FMFDTSSQEM FHDSLNLNSD ATWHMNHHHQ FPTAVLGGPQ MGLTAVAAAA ATSNYLPPLI 240 DNIESLVAMD DEGEMALQCL QRQELNEWVV ESTQPQNSNF LFWENVEGSL GGEEIIAPPS 300 NSAIGGGGEG VBSLSSSNFP SSLIISEKNR REISKYLFQE GVCYAKKDYN LAKHPEIDVP 360 NLQVIKLMQS FKSKEYVRET FAWMHYYWYL TNDGIEFLRT YLNLPSEIVP ATLKKQAKPA 420 GRPFGGPSGD RPRGPSRFDG ERRFGDRDGY RGGPRGPGGD FGDKGGAPAD YRPSFGGPGG 480 RPGFGRGAGG YGGAPAPSNL E

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPN  120
SVSSTVTAAX TTAANNTEHS QLSSSNPHQL NFLTQDLTTK HLSLHRETLF PIPAVSCPGL  180
FMFDTSSQEM FHDSLNLNSD ATWHMNHHHQ FPTAVLGGPQ MGLTAVAAAA ATSNYLPPLI  240
DNIESLVAMD DEGEMALQCL QRQELNEWVV ESTQPQNSNF LFWENVEGSL GGEEIIAPPS  300
NSAIGGGGEG VBSLSSSNFP SSLIISEKNR REISKYLFQE GVCYAKKDYN LAKHPEIDVP  360
NLQVIKLMQS FKSKEYVRET FAWMHYYWYL TNDGIEFLRT YLNLPSEIVP ATLKKQAKPA  420
GRPFGGPSGD RPRGPSRFDG ERRFGDRDGY RGGPRGPGGD FGDKGGAPAD YRPSFGGPGG  480
RPGFGRGAGG YGGAPAPSNL E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	2e-93	MYB family protein