PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022158596.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 296aa MW: 31030.1 Da PI: 9.5836

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022158596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.5e-07	35	59	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C f+ t C++G++C+F H XP_022158596.1 35 KSKPCTKFFSTAGCPFGESCHFLHH 59 7789********************6 PP
2	zf-CCCH	24.8	3.8e-08	103	127	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+ + Ck+Gd+C+FaHg+ XP_022158596.1 103 NRMCNKYNTAEGCKFGDKCNFAHGE 127 578********************96 PP
3	zf-CCCH	38.2	2.4e-12	263	287	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G+rC+FaHg XP_022158596.1 263 YKTKLCDNFAK-GSCTFGERCHFAHG 287 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MDMRKRGRPE AGFNSNGGFK KHKQEMESLS TVGSKSKPCT KFFSTAGCPF GESCHFLHHV 60 PGGYNVVAQM MNLAPAGSQP SRNMAAPPSV TNGGSSAPPL VKNRMCNKYN TAEGCKFGDK 120 CNFAHGEWEL GRPGAQSHDN PRAMGGHMVG RMGGRMDPAP PGPAASFGAS ATAKISIDAS 180 LAGAIIGKGG INSKQICRQT GAKLSIRDHE SDPNLRNIEL EGTFEQINEA SAMVRELIIT 240 VSMSGPGKNS GVAGGPAPSG SNYKTKLCDN FAKGSCTFGE RCHFAHGAAE LRKSGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-52	C3H family protein