PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022158742.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 404aa MW: 44165.8 Da PI: 7.8853

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022158742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022158742.1 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80 5789*********************97 PP
2	zf-CCCH	39	1.4e-12	101	125	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022158742.1 101 QPECQYYLKTGTCKFGATCKFHHPR 125 799********************96 PP
3	zf-CCCH	38.2	2.4e-12	147	171	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG+Ck+G++CkF+H++ XP_022158742.1 147 ETECSYYLRTGQCKFGNTCKFHHPQ 171 579********************97 PP
4	zf-CCCH	38	2.7e-12	265	291	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022158742.1 265 PGQPECQFYMKTGDCKFGAVCRFHHPR 291 5789*********************96 PP
5	zf-CCCH	39.9	7.3e-13	312	337	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF H++ XP_022158742.1 312 GEPLCIFYSRYGICKFGPSCKFDHPM 337 789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MEYDSGIPMS VTEGHSSALT PSLREGSLAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS 60 YYIRTGLCRF GATCRFNHPP NRELAIATAR MKGEFPERIG QPECQYYLKT GTCKFGATCK 120 FHHPRDKAGI AGRVALNILG YPLRPNETEC SYYLRTGQCK FGNTCKFHHP QPTNMMVSLR 180 GSPIYPSVQS PTPGQQSYPG GSTNWSRASF IPSPRWQGPS SYASLILPQG VLSVPGWNAF 240 NDQLGSVSSS ESPQQTRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERVIPAPDC 300 VLSPIGLPLR QGEPLCIFYS RYGICKFGPS CKFDHPMGIF AYNLSAASSA NAPVQHLFGT 360 SSGTTALNLS SEGLVEAGSA KPRRLSLSET REMPSDDENI DAEG

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MEYDSGIPMS VTEGHSSALT PSLREGSLAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS  60
YYIRTGLCRF GATCRFNHPP NRELAIATAR MKGEFPERIG QPECQYYLKT GTCKFGATCK  120
FHHPRDKAGI AGRVALNILG YPLRPNETEC SYYLRTGQCK FGNTCKFHHP QPTNMMVSLR  180
GSPIYPSVQS PTPGQQSYPG GSTNWSRASF IPSPRWQGPS SYASLILPQG VLSVPGWNAF  240
NDQLGSVSSS ESPQQTRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERVIPAPDC  300
VLSPIGLPLR QGEPLCIFYS RYGICKFGPS CKFDHPMGIF AYNLSAASSA NAPVQHLFGT  360
SSGTTALNLS SEGLVEAGSA KPRRLSLSET REMPSDDENI DAEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-178	C3H family protein