PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022715138.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 467aa MW: 52070 Da PI: 5.1361

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022715138.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26	1.9e-08	59	101	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 + C+ + +k+++++C ++ +lC+ C ++ H+ H++v XP_022715138.1 59 TACDGCLRKRARWYCAADDAFLCQGCDTSVHSAnqlasrHERV 101 67*****************************657788888765 PP
2	CCT	66.8	5.8e-23	416	459	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKr+ R+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_022715138.1 416 REARVSRYKEKRRMRLFSKKIRYEVRKLNAEQRPRMKGRFVKRT 459 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MAEVKPQVLV GFPLSAHASI NWRRMLEVWD DSAREICFSV YPIISDKRAA NAMGGKTATA 60 CDGCLRKRAR WYCAADDAFL CQGCDTSVHS ANQLASRHER VRFETASSRF NVSVMNSTNN 120 QDAPPAWHQG FTRKARTPRQ NKSMLGKQKG DGKVLNLNPL DPLVPEIGSE DGSVDENEEQ 180 LLSRVPVYNP FASELSNIVT GDGDEDGNLE VDGYEHEGTC ELDDGLHGFL ASDLDLTEFA 240 ADVESLLEVG AEEDTCCDIK GPELLDCKQK HESNAFHERK IMKVKDEEEE SITACCFDSS 300 FDVTRASLNG SFDYESPTIG EEEEVKVVPV VETTIMNGES KAEKKRNMLL RLNYESVITA 360 WASQGSSWTT GSRPEFNPDD FMSLQGSNPK DGHHDLNGGI GGIYSQARGN HTDGEREARV 420 SRYKEKRRMR LFSKKIRYEV RKLNAEQRPR MKGRFVKRTS FVGTASP

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MAEVKPQVLV GFPLSAHASI NWRRMLEVWD DSAREICFSV YPIISDKRAA NAMGGKTATA  60
CDGCLRKRAR WYCAADDAFL CQGCDTSVHS ANQLASRHER VRFETASSRF NVSVMNSTNN  120
QDAPPAWHQG FTRKARTPRQ NKSMLGKQKG DGKVLNLNPL DPLVPEIGSE DGSVDENEEQ  180
LLSRVPVYNP FASELSNIVT GDGDEDGNLE VDGYEHEGTC ELDDGLHGFL ASDLDLTEFA  240
ADVESLLEVG AEEDTCCDIK GPELLDCKQK HESNAFHERK IMKVKDEEEE SITACCFDSS  300
FDVTRASLNG SFDYESPTIG EEEEVKVVPV VETTIMNGES KAEKKRNMLL RLNYESVITA  360
WASQGSSWTT GSRPEFNPDD FMSLQGSNPK DGHHDLNGGI GGIYSQARGN HTDGEREARV  420
SRYKEKRRMR LFSKKIRYEV RKLNAEQRPR MKGRFVKRTS FVGTASP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	443	RRMRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	8e-83	CO-like family protein