PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022716229.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family GRAS
Protein Properties Length: 542aa    MW: 60678.7 Da    PI: 6.105
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022716229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS403.81.7e-1231725421374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++c +a++++d++ +  l+  l++++s +g+p+qRl ay++e+L+arl +s+s++ykal+++e +   s+e ++++++++ ++P+ kf++
  XP_022716229.1 172 LKQVLIACGQALNDDDMSTVAGLMHVLEKMVSVSGEPIQRLGAYVLEGLRARLESSGSNIYKALKCKEPT---STELMSYMHILFRICPYWKFAY 263
                     5799*****************************************************************9...999******************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN  I e +e e ++HiiDf+i qG+QW+ L+ aLa+Rp+gpps+RiTgv++++s+  +   l+ ++++L++fA++ +vpfef+  +a +  +
  XP_022716229.1 264 TSANVVIKEVMEYEPKIHIIDFQIAQGTQWMYLIAALAKRPGGPPSIRITGVDDSQSNhaRGGGLNIVRQKLSEFAASYNVPFEFHD-AAMSGCE 357
                     ******************************************************9988889999***********************.899999* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L+v+pgEalaVn+ + lh+++desvs+ ++rd++L+lvkslsPk+v+++eqe+++n+++F+ r le+l+yy+a+f+s+++  pr++++ri
  XP_022716229.1 358 IQLEHLKVRPGEALAVNFPYVLHHMPDESVSTWNHRDRLLRLVKSLSPKIVTLAEQESNTNTSPFFSRYLETLDYYTAMFESIDVACPRDDKQRI 452
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn++aceg er+erhe l+kWr r+++a F+p+pls+++++ ++ ll++++++ yr+e+++g+l+lgW +r++ + SaWr
  XP_022716229.1 453 SAEQHCVARDIVNMIACEGPERVERHELLGKWRCRFMMADFSPYPLSSSVTMAVRDLLKEYDNN-YRLEDRDGALYLGWVHRAMATSSAWR 542
                     **************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MRTSQKHHRS NDQPVKEIDP FCLPHIQILD NNVCSDICSQ GTSVSFQTYK DQIFTLESST  60
ATAGFVAYDS PSAVSISSSR SPFSPQGSQS CLSDPHHSPD NTYGSPFSGS SVVDDSNELK  120
HKLRELEISL LGPESDIIDS CNCCFTSGAH QAASMASLNF NQLVDVIPRL DLKQVLIACG  180
QALNDDDMST VAGLMHVLEK MVSVSGEPIQ RLGAYVLEGL RARLESSGSN IYKALKCKEP  240
TSTELMSYMH ILFRICPYWK FAYTSANVVI KEVMEYEPKI HIIDFQIAQG TQWMYLIAAL  300
AKRPGGPPSI RITGVDDSQS NHARGGGLNI VRQKLSEFAA SYNVPFEFHD AAMSGCEIQL  360
EHLKVRPGEA LAVNFPYVLH HMPDESVSTW NHRDRLLRLV KSLSPKIVTL AEQESNTNTS  420
PFFSRYLETL DYYTAMFESI DVACPRDDKQ RISAEQHCVA RDIVNMIACE GPERVERHEL  480
LGKWRCRFMM ADFSPYPLSS SVTMAVRDLL KEYDNNYRLE DRDGALYLGW VHRAMATSSA  540
WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein