PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022718406.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

GATA

Protein Properties

Length: 540aa MW: 59909.3 Da PI: 6.7857

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022718406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_022718406.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RVEPDYYEDH 60 GTSRVKSISI NKNKEIKLLK RKPNHDIAVI AADYNQGFHK IVDEDTSNRS SSGSAISNSE 120 SCAQFGSADA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS SVEKLTKDLY TILHEQQSSY 180 FSGSSEEDLL LESDTPMVSV EIGHGSILIR HPSSIAREEE SEASSLSVEN KQYSMNEAYS 240 HSSSFPAYND SKGIKFSGLG IERAKNPAGQ GMQHEQLKRD KAQHEKSLLL ESQNSPLCNI 300 DLNDILNFEE FVKLLTNEEQ QQLLQYLPPL DIAKLPDSLK NMFKSPQFKE NLCYFQQLLE 360 EGIFNISAQG VKPEDCKTLK RLALFNLMKS QWVERHHVLK LQKCISIGGS VTARRPNAIT 420 SNNLVVMKRS CDSQSQNFPE ARTLKSPKQV MTKATYENKE LIDNDGSCFS PRSLFALPPD 480 GSSLVLDSLH FVDESSDQDL LLDVPSNGSF PQAELLHPTI SFGQQASASS SSAHPHPVHP

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RVEPDYYEDH  60
GTSRVKSISI NKNKEIKLLK RKPNHDIAVI AADYNQGFHK IVDEDTSNRS SSGSAISNSE  120
SCAQFGSADA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS SVEKLTKDLY TILHEQQSSY  180
FSGSSEEDLL LESDTPMVSV EIGHGSILIR HPSSIAREEE SEASSLSVEN KQYSMNEAYS  240
HSSSFPAYND SKGIKFSGLG IERAKNPAGQ GMQHEQLKRD KAQHEKSLLL ESQNSPLCNI  300
DLNDILNFEE FVKLLTNEEQ QQLLQYLPPL DIAKLPDSLK NMFKSPQFKE NLCYFQQLLE  360
EGIFNISAQG VKPEDCKTLK RLALFNLMKS QWVERHHVLK LQKCISIGGS VTARRPNAIT  420
SNNLVVMKRS CDSQSQNFPE ARTLKSPKQV MTKATYENKE LIDNDGSCFS PRSLFALPPD  480
GSSLVLDSLH FVDESSDQDL LLDVPSNGSF PQAELLHPTI SFGQQASASS SSAHPHPVHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-133	GATA family protein