PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022718493.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 442aa MW: 48206.1 Da PI: 8.5995

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022718493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	51	77	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022718493.1 51 PGEPDCSYYIRTGLCRFGATCRFNHPP 77 5789*********************97 PP
2	zf-CCCH	40.2	5.8e-13	97	122	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ XP_022718493.1 97 GQPECQYYLKTGTCKFGATCKFHHPR 122 5799********************96 PP
3	zf-CCCH	37.2	4.8e-12	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C +++rtG+Ck+G++CkF+H++ XP_022718493.1 143 DETECAYYLRTGQCKFGSTCKFHHPQ 168 5789********************97 PP
4	zf-CCCH	38.5	2e-12	304	329	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_022718493.1 304 DQPECQFYMKTGDCKFGAVCRFHHPR 329 689*********************96 PP
5	zf-CCCH	40.7	3.9e-13	349	375	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ XP_022718493.1 349 PGEPLCIFYSRYGICKFGPSCKFNHPM 375 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MSRTAAAVAA AAAVAVTEGT SLSLSLNQDD MWQMNLRSSE MMESGPYPER PGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERLGQPE CQYYLKTGTC KFGATCKFHH 120 PRDKVGISGR VSLNILGYPL RPDETECAYY LRTGQCKFGS TCKFHHPQPT NMMVSLRGSP 180 IYPTVPSPTT PGQQSYPGGI TNWSRASFIP SPRWQGPSSY ASLILPXGMV SVPGWNAYSG 240 QLASVSSSEN VQQTNGNNQI YGTSRHNESA TAGSQASFSQ LRSGSVPVGF YALQRENVFP 300 ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RVLPAPDCLL SPIGLPLRPG EPLCIFYSRY 360 GICKFGPSCK FNHPMGIFTY NYSASSPSAA PVRHFLGSSS GTAGLNLSSE GLVEAGSTKP 420 RRVSLSENRQ LSSSDDNIDT EG

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MSRTAAAVAA AAAVAVTEGT SLSLSLNQDD MWQMNLRSSE MMESGPYPER PGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERLGQPE CQYYLKTGTC KFGATCKFHH  120
PRDKVGISGR VSLNILGYPL RPDETECAYY LRTGQCKFGS TCKFHHPQPT NMMVSLRGSP  180
IYPTVPSPTT PGQQSYPGGI TNWSRASFIP SPRWQGPSSY ASLILPXGMV SVPGWNAYSG  240
QLASVSSSEN VQQTNGNNQI YGTSRHNESA TAGSQASFSQ LRSGSVPVGF YALQRENVFP  300
ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RVLPAPDCLL SPIGLPLRPG EPLCIFYSRY  360
GICKFGPSCK FNHPMGIFTY NYSASSPSAA PVRHFLGSSS GTAGLNLSSE GLVEAGSTKP  420
RRVSLSENRQ LSSSDDNIDT EG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein