PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022719343.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

NF-YC

Protein Properties

Length: 260aa MW: 28787.5 Da PI: 6.2277

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022719343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.8	1e-55	80	183	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_022719343.1 80 QLQAFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 174 89****99999****************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_022719343.1 175 VDIVPREDL 183 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MDQQGHGQPP AMGIMGSGAQ VPYGTNPYQN QVTGAPNPGP VVTSVGGIQS TSQPTGAQLA 60 QHQLAYQQIH HQQQQQLQQQ LQAFWANQYQ EIEKVTDFKN HSLPLARIKK IMKADEDVRM 120 ISAEAPVIFA RACEMFILEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR 180 EDLKDEVLAS IPRGTMPVGG PADALSYYMP AQHAPQVGTP GMIMGKPVVD PAIYAQQSHP 240 YMAQQMWPPG PEQQQSSSDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	2e-86	NF-YC family protein