PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022720155.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

RAV

Protein Properties

Length: 357aa MW: 41000.4 Da PI: 9.228

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022720155.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.5	1e-10	44	91	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV + k +g+W A+++ + +r++lg+f ++++Aa a++ a+ k++ XP_022720155.1 44 SQFKGVMRQK-NGQWGAQLYA------NhTRIWLGTFKSEKDAAMAYDSAAIKFR 91 789*8666.8**887......34******99********9987 PP
2	B3	80.7	1.5e-25	167	271	1	90
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ltp dv+k++rlv+pkk+a ++ gg+ +++ +l ++d+ r W+++++y+++s+++v+t+GW++F k+++Lk++D++ XP_022720155.1 167 FQKELTPTDVGKLNRLVIPKKYAVKYfppvsgskkendetGGSMANDAELFFYDKFMRLWKFRYCYWNSSQSFVFTRGWNRFLKEKQLKANDVIS 261 99***************************88887777766666999******************************************* PP EEE-SS.SEE CS B3 82 Fkldgr.sef 90 F++ +r +e+ XP_022720155.1 262 FYVCQRrKER 271 88774555 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MMEEEMSSVI SSGEVNATSE VLDSISTNHP ANKRQRCGCN GTSSQFKGVM RQKNGQWGAQ 60 LYANHTRIWL GTFKSEKDAA MAYDSAAIKF RPGDTHRNFP WTDVTVEEPK FQSHYSAEAV 120 PNMIRDGSYQ YKFLDFLKAR SRNAKAEIDL NSVGTYSNKG LTCKQLFQKE LTPTDVGKLN 180 RLVIPKKYAV KYFPPVSGSK KENDETGGSM ANDAELFFYD KFMRLWKFRY CYWNSSQSFV 240 FTRGWNRFLK EKQLKANDVI SFYVCQRRKE REIHRFCMID VNEFGNNSAL IEAANFQVGR 300 EVDLQLRLGH CYASDGQNHV KQEKLMEAWP KQGQVMAAEA RQDVNTEGFK LFGIQIN

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MMEEEMSSVI SSGEVNATSE VLDSISTNHP ANKRQRCGCN GTSSQFKGVM RQKNGQWGAQ  60
LYANHTRIWL GTFKSEKDAA MAYDSAAIKF RPGDTHRNFP WTDVTVEEPK FQSHYSAEAV  120
PNMIRDGSYQ YKFLDFLKAR SRNAKAEIDL NSVGTYSNKG LTCKQLFQKE LTPTDVGKLN  180
RLVIPKKYAV KYFPPVSGSK KENDETGGSM ANDAELFFYD KFMRLWKFRY CYWNSSQSFV  240
FTRGWNRFLK EKQLKANDVI SFYVCQRRKE REIHRFCMID VNEFGNNSAL IEAANFQVGR  300
EVDLQLRLGH CYASDGQNHV KQEKLMEAWP KQGQVMAAEA RQDVNTEGFK LFGIQIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	1e-103	RAV family protein