PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022720700.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family GRAS
Protein Properties Length: 548aa    MW: 61245.3 Da    PI: 6.1704
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022720700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4102.2e-1251785481374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++c +a+++gd++ +  l+  l +++s +g+p+qRl ay++e+L+arl +s+s++yk+l+++e +   sse ++++++++ ++P+ kf++
  XP_022720700.1 178 LKQVLVDCGQALHDGDTSTVAGLMHVLDKMVSVSGEPIQRLGAYVLEGLRARLESSGSNIYKTLKCKEPT---SSELMSYMHILFRICPYWKFAY 269
                     5799*****************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN  I e +e e +vHiiDf+i qG+QW+ L+ aLa+Rp+gpps+R+Tgv++++s+  +   l+ +g++L++fAe+ +vpfef+  +a +  +
  XP_022720700.1 270 TSANVVIKEVMEYEPKVHIIDFQIAQGTQWMLLIAALAKRPGGPPSIRLTGVDDSQSNhaRGGGLNIVGRKLSEFAESYNVPFEFHD-AAMSGCE 363
                     ******************************************************9988889999***********************.899999* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+v+pgEalaVn+ + lh+++desvs+ ++rd++L+lvkslsPkv+++veqe+++n+++F+ r le+l+yy+a+f+s+++  pr++++ri
  XP_022720700.1 364 IQVEHLKVQPGEALAVNFPYVLHHMPDESVSIWNHRDRLLRLVKSLSPKVLTLVEQESNTNTSPFFSRYLETLDYYTAMFESIDVACPRDDQQRI 458
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       E+ +++r+ivn++aceg er+erhe  +kWr+r+++aGF+p+pls+++++ ++ llr+++++ yr+ee++g+l+lgW +r++ + SaWr
  XP_022720700.1 459 RAEQNCVARDIVNMIACEGPERVERHELHGKWRSRFMMAGFSPYPLSSSVTMAVRDLLREYDKN-YRLEEREGALYLGWVNRAMATSSAWR 548
                     **************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MQTSQKHQTP ASIHRLYHQP VKEIDPFSLP HLQILDNNVC SDICSQGTSV SFQTYKDQFF  60
TLESSTATAG FVVYDSPSAV SISSSRSPFS PQGSQSCLSD SHHSLDNTYG SPFSGSSVVD  120
DSNELKHKLR ELEISLLGPE SDIIDSCNCC FSSGAHQAAS MASLNCDQLV GMIPRLDLKQ  180
VLVDCGQALH DGDTSTVAGL MHVLDKMVSV SGEPIQRLGA YVLEGLRARL ESSGSNIYKT  240
LKCKEPTSSE LMSYMHILFR ICPYWKFAYT SANVVIKEVM EYEPKVHIID FQIAQGTQWM  300
LLIAALAKRP GGPPSIRLTG VDDSQSNHAR GGGLNIVGRK LSEFAESYNV PFEFHDAAMS  360
GCEIQVEHLK VQPGEALAVN FPYVLHHMPD ESVSIWNHRD RLLRLVKSLS PKVLTLVEQE  420
SNTNTSPFFS RYLETLDYYT AMFESIDVAC PRDDQQRIRA EQNCVARDIV NMIACEGPER  480
VERHELHGKW RSRFMMAGFS PYPLSSSVTM AVRDLLREYD KNYRLEEREG ALYLGWVNRA  540
MATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein