PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022720815.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

M-type_MADS

Protein Properties

Length: 232aa MW: 26670.7 Da PI: 8.0957

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022720815.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.4	6.8e-12	71	109	9	47
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 r ++fsk r i KKA+EL LC+ae+ i+fs+ gk + XP_022720815.1 71 RLISFSKCRSRIYKKASELAALCGAEIGFIVFSPAGKPF 109 789********************************9855 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MANIEWMLSI AETDTSYYHS LIKHMPMETF VLHTLREAMT ERRQLKGLIA FNFLTMSGSG 60 KKTKGRLEVD RLISFSKCRS RIYKKASELA ALCGAEIGFI VFSPAGKPFS FGHPSIESVA 120 NRFLHENPAP NDNTNPLVEA LRKGRINQLS QQLNEVLSQL DAAKETAKAI DQLTIEKETH 180 GWWETPIDQL NQKELQELYT YFEDLRNNLY SNMNKRVLEP LLHCLLQWIR LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	7e-35	M-type_MADS family protein