PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022721057.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

Trihelix

Protein Properties

Length: 406aa MW: 45752.4 Da PI: 5.0486

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022721057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.5	4.3e-24	295	379	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ +e++l + k W+e+s m g+ rs+k+Ckekwen+nk+++k ++ kk+ e+s++c+yf++l+ XP_022721057.1 295 RWPDAEVQALIMLRSALEHKLHVTGFKCSIWDEISVGMYGMGYCRSAKKCKEKWENINKYFRKSMASGKKH-LENSKRCAYFHELD 379 8*******************************************************************9.567789****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MELFVGCGET FPQRVAPFPD LTAIESAEDS MMGAGRPNLP PRKLRPIRFN GRSPATSLAE 60 DPSEFIEAVE LVGDDVCAVN GDSGEYLEPP IIAEVGDVVD TGVSGGGEEP PISEQGGESS 120 SSSSSDSDDN GLSANASEPL NRNRKRKRRK RIELFLENLV MKVMEKQEQM HKQLIEMIEK 180 RERERIIREE AWKRQEMERI KRDEEARAQE TSRSIAIISF IQNALGHEIE IPIQSTTSCM 240 EENGGKDLSE DHIQMDMINP CDPINRWQEG TMQANGGEIH VHKDVGFNCD PNNRRWPDAE 300 VQALIMLRSA LEHKLHVTGF KCSIWDEISV GMYGMGYCRS AKKCKEKWEN INKYFRKSMA 360 SGKKHLENSK RCAYFHELDM LHKNGLGGSP TNHDNCTKDE NEDRVG

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MELFVGCGET FPQRVAPFPD LTAIESAEDS MMGAGRPNLP PRKLRPIRFN GRSPATSLAE  60
DPSEFIEAVE LVGDDVCAVN GDSGEYLEPP IIAEVGDVVD TGVSGGGEEP PISEQGGESS  120
SSSSSDSDDN GLSANASEPL NRNRKRKRRK RIELFLENLV MKVMEKQEQM HKQLIEMIEK  180
RERERIIREE AWKRQEMERI KRDEEARAQE TSRSIAIISF IQNALGHEIE IPIQSTTSCM  240
EENGGKDLSE DHIQMDMINP CDPINRWQEG TMQANGGEIH VHKDVGFNCD PNNRRWPDAE  300
VQALIMLRSA LEHKLHVTGF KCSIWDEISV GMYGMGYCRS AKKCKEKWEN INKYFRKSMA  360
SGKKHLENSK RCAYFHELDM LHKNGLGGSP TNHDNCTKDE NEDRVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	150	NRKRKRRK
2	144	149	RKRKRR
3	144	150	RKRKRRK
4	144	151	RKRKRRKR
5	145	150	KRKRRK
6	145	151	RKRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	6e-41	Trihelix family protein