PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022721316.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 816aa MW: 94888.4 Da PI: 7.9922

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022721316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2e-06	224	243	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_022721316.1 224 CPFHLKTGACRFGQRCSRVH 243 ******************99 PP
2	zf-CCCH	24.8	3.9e-08	353	380	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C f+++ tC++G C+F+H+ XP_022721316.1 353 WKVAICGEFMKSRfkTCSHGTACNFIHC 380 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence
MGEAEAEAEA ILKQEEGGGK RENHPMEKSR KEKRKEMKKI KRKQLRKEAA EKEREAEEAR 60 LNDPEEQKRI AREEEEELKR REIALNEFEE RERSWIEAME MKRKAQEDEE QEEKKMNDLN 120 EDSNGEQRKQ EEMGDDWEYV EEGPAEIIWQ GNEIIVRKKK VRVPKGEGNQ KSKGEDADRP 180 TSNPLPPQSE AFADYLNASS AQQVLESVAK EVPNFGTEQD KAHCPFHLKT GACRFGQRCS 240 RVHFYPDKSC TLLIRNMYNG PGLAWEQDEG LEYTDEEVER CYEEFYEDVH TEFLKFGEIV 300 NFKVCKNGSF HLRGNVYVHY KLLESAVLAY DSINGRYFAG KQVQCEFVNI TRWKVAICGE 360 FMKSRFKTCS HGTACNFIHC FRNPGGDYEW ADLDKPPPRY WVKKMAALFG YADEAVFEKQ 420 TEQEHSGHSR TSRMVKLDDG RHYSRRSKSR EKVRFIDGAQ ESKHSQRGMN NDRKQRKILD 480 GRWDGQNTSL KWDQNSERSH DTSSDGGCLD SQMGKNNDRK QTKILDERLD RQSKSLKRGQ 540 NSERIHDTSS DGGYSESDIN GTRDTDQVRR HCHAKKNSKR QNESSEYLAD HKNIENRVYE 600 DTENLHGHTK KRRRHCSKVG YPDDDGGSDI QTHKDNGDQL NRDRDNEKHC SHGGKSSRHH 660 IKESPLDDLG ASKNRTNVGD SLLKQSSRVS DREGRHHDRQ KSLGNLDQVS GLLDDHGKAY 720 GTSDSNSSDH GSERDKRRHH GHRRKRSRHV VECSEFPDAS GHQAKKLKGK RDLKRYRHST 780 HRYETDSSED YEMKHNVKRR SHGHKRHDEK KPNRDS

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence

MGEAEAEAEA ILKQEEGGGK RENHPMEKSR KEKRKEMKKI KRKQLRKEAA EKEREAEEAR  60
LNDPEEQKRI AREEEEELKR REIALNEFEE RERSWIEAME MKRKAQEDEE QEEKKMNDLN  120
EDSNGEQRKQ EEMGDDWEYV EEGPAEIIWQ GNEIIVRKKK VRVPKGEGNQ KSKGEDADRP  180
TSNPLPPQSE AFADYLNASS AQQVLESVAK EVPNFGTEQD KAHCPFHLKT GACRFGQRCS  240
RVHFYPDKSC TLLIRNMYNG PGLAWEQDEG LEYTDEEVER CYEEFYEDVH TEFLKFGEIV  300
NFKVCKNGSF HLRGNVYVHY KLLESAVLAY DSINGRYFAG KQVQCEFVNI TRWKVAICGE  360
FMKSRFKTCS HGTACNFIHC FRNPGGDYEW ADLDKPPPRY WVKKMAALFG YADEAVFEKQ  420
TEQEHSGHSR TSRMVKLDDG RHYSRRSKSR EKVRFIDGAQ ESKHSQRGMN NDRKQRKILD  480
GRWDGQNTSL KWDQNSERSH DTSSDGGCLD SQMGKNNDRK QTKILDERLD RQSKSLKRGQ  540
NSERIHDTSS DGGYSESDIN GTRDTDQVRR HCHAKKNSKR QNESSEYLAD HKNIENRVYE  600
DTENLHGHTK KRRRHCSKVG YPDDDGGSDI QTHKDNGDQL NRDRDNEKHC SHGGKSSRHH  660
IKESPLDDLG ASKNRTNVGD SLLKQSSRVS DREGRHHDRQ KSLGNLDQVS GLLDDHGKAY  720
GTSDSNSSDH GSERDKRRHH GHRRKRSRHV VECSEFPDAS GHQAKKLKGK RDLKRYRHST  780
HRYETDSSED YEMKHNVKRR SHGHKRHDEK KPNRDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	736	746	KRRHHGHRRKR
2	743	768	RRKRSRHVVECSEFPDASGHQAKKLK
3	743	770	RRKRSRHVVECSEFPDASGHQAKKLKGK
4	744	769	RRKRSRHVVECSEFPDASGHQAKKLK
5	798	802	KRRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-162	C3H family protein