PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022721923.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 473aa MW: 50012 Da PI: 8.408

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022721923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	6.9e-12	44	68	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG+C yG++C+F+H++ XP_022721923.1 44 EADCMYYLRTGFCGYGSKCRFNHPR 68 689********************96 PP
2	zf-CCCH	40.1	5.9e-13	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++rtGtCk+G++Ck++H++ XP_022721923.1 90 QPVCQFYMRTGTCKFGASCKYNHPK 114 689********************96 PP
3	zf-CCCH	34.7	3.1e-11	136	159	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+++ +tG Ck+G++CkF+H+ XP_022721923.1 136 EKECSYYVKTGRCKFGATCKFHHP 159 689********************8 PP
4	zf-CCCH	38.6	1.8e-12	296	322	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p XP_022721923.1 296 PGQPECHYYMKTGDCKYGSSCRYHHPP 322 5789*********************97 PP
5	zf-CCCH	34.1	4.7e-11	344	368	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+G+ CkF H++ XP_022721923.1 344 APPCTHYSQRGACKFGAACKFDHPM 368 689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MERGSDSDPE PEWTASGPET GLEEPVWRLG LGDGSESYPV RPNEADCMYY LRTGFCGYGS 60 KCRFNHPRDH ARVIGAGRGG VEEYPERVGQ PVCQFYMRTG TCKFGASCKY NHPKQGGGSV 120 NSVPLNYYGY PLRLGEKECS YYVKTGRCKF GATCKFHHPA PPAVQLPAPS LAPPVARLPT 180 PGPVPMSYPM VQSPSGRSSQ QYGVVMARPP LMPGSYGQAP YGPLMLSPGM VYVPSWNPYL 240 APVNPGTQSN VGSSSIFRVT PLSPSAPAYT GSYQPVPSSV GPSSSFQKEQ SFPERPGQPE 300 CHYYMKTGDC KYGSSCRYHH PPEVIAPKAD VILSPLGFPL RPGAPPCTHY SQRGACKFGA 360 ACKFDHPMGT FSYSPSASSL ADVPVAPCSV GSTVGTLAPS SSSSELRPEL LSGSSKDPAP 420 SIMSSSASAS SESVGSFFSK GTPVPQSSTQ QSTQSSAPST GSGSSSTKAH TSS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MERGSDSDPE PEWTASGPET GLEEPVWRLG LGDGSESYPV RPNEADCMYY LRTGFCGYGS  60
KCRFNHPRDH ARVIGAGRGG VEEYPERVGQ PVCQFYMRTG TCKFGASCKY NHPKQGGGSV  120
NSVPLNYYGY PLRLGEKECS YYVKTGRCKF GATCKFHHPA PPAVQLPAPS LAPPVARLPT  180
PGPVPMSYPM VQSPSGRSSQ QYGVVMARPP LMPGSYGQAP YGPLMLSPGM VYVPSWNPYL  240
APVNPGTQSN VGSSSIFRVT PLSPSAPAYT GSYQPVPSSV GPSSSFQKEQ SFPERPGQPE  300
CHYYMKTGDC KYGSSCRYHH PPEVIAPKAD VILSPLGFPL RPGAPPCTHY SQRGACKFGA  360
ACKFDHPMGT FSYSPSASSL ADVPVAPCSV GSTVGTLAPS SSSSELRPEL LSGSSKDPAP  420
SIMSSSASAS SESVGSFFSK GTPVPQSSTQ QSTQSSAPST GSGSSSTKAH TSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-146	C3H family protein