PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022722880.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

NF-YC

Protein Properties

Length: 257aa MW: 28451 Da PI: 6.5144

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022722880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.2	3.7e-56	82	185	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_022722880.1 82 QLQSFWTNQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 176 89****9999******************************************************************************* PP NF-YC 93 vdivprdel 101 vdivpr++l XP_022722880.1 177 VDIVPREDL 185 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MDQQGRGKTS TMGLFGSAAA VSYGVTSYQP TQMVGSSAPG SVASIQSPSQ PAGLPASSVQ 60 LAQHQLAYQH IHQQQQQQLQ QQLQSFWTNQ YQEIEQTTDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVV FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIAAAITRT DIFDFLVDIV 180 PREDLKDELL ASGSRVGGPA DGLPYYYMPP QLAQQAGAAG MTVGKPVMDH ALYGQQSRPY 240 AGQQMWPQQQ QQPPSDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	161	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	2e-75	NF-YC family protein