PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022723314.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

Trihelix

Protein Properties

Length: 411aa MW: 46881.1 Da PI: 5.6864

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022723314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.5	4.2e-24	294	378	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ +e+++ + k W+e+s m g+ rs+k+Ckekwen+nk+++k + kk+ e+s++c+yf++l+ XP_022723314.1 294 RWPDAEVQALIMLRSALEHKFPVTGHKCSIWDEISVGMYNMGYCRSAKKCKEKWENINKYFRKSMGSGKKH-MENSKRCAYFHDLH 378 8******************************************************************98.78888*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MELFNGGREA FPQHVAPFPD ATAIIETAED SMTWDHRPNL PLQKLRPIRY NMRSPAISKA 60 EDPLEFTEAV ELVGDKVCAV NGDCCECLEP PIKAEVGDVL YTGGGEEEGP PSSEQGGEPS 120 GSSSDSDDND SSATVNEPLN KKRKRKRRKK IELFLEKLVM KVMDKQEQMH KQLIEMIEKR 180 ERERIIREEA WKQQEMERIK RDEEARAQET SRSLALISFI QNALGHETEI PMQSTMSCME 240 ENGGEDISEY HIQKDMINPF EPIKRWPEGK MQVNGGENHV DKEIGINCDP NNRRWPDAEV 300 QALIMLRSAL EHKFPVTGHK CSIWDEISVG MYNMGYCRSA KKCKEKWENI NKYFRKSMGS 360 GKKHMENSKR CAYFHDLHML YKNGLGSPAN HVNCAKVGNE ENVESMKGSE C

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MELFNGGREA FPQHVAPFPD ATAIIETAED SMTWDHRPNL PLQKLRPIRY NMRSPAISKA  60
EDPLEFTEAV ELVGDKVCAV NGDCCECLEP PIKAEVGDVL YTGGGEEEGP PSSEQGGEPS  120
GSSSDSDDND SSATVNEPLN KKRKRKRRKK IELFLEKLVM KVMDKQEQMH KQLIEMIEKR  180
ERERIIREEA WKQQEMERIK RDEEARAQET SRSLALISFI QNALGHETEI PMQSTMSCME  240
ENGGEDISEY HIQKDMINPF EPIKRWPEGK MQVNGGENHV DKEIGINCDP NNRRWPDAEV  300
QALIMLRSAL EHKFPVTGHK CSIWDEISVG MYNMGYCRSA KKCKEKWENI NKYFRKSMGS  360
GKKHMENSKR CAYFHDLHML YKNGLGSPAN HVNCAKVGNE ENVESMKGSE C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	146	KKRKRK
2	141	147	KKRKRKR
3	141	149	KKRKRKRRK
4	142	148	KKRKRKR
5	142	150	KKRKRKRRK
6	143	149	KKRKRKR
7	143	148	RKRKRR
8	143	150	RKRKRRKK
9	144	150	KKRKRKR
10	144	149	KRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	8e-43	Trihelix family protein