PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022725535.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

RAV

Protein Properties

Length: 411aa MW: 46154.4 Da PI: 8.7955

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022725535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.7	6.8e-14	108	156	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g XP_022725535.1 108 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 156 89**9888.8*****3.....5******99***********98 PP
2	B3	100.5	1e-31	237	336	1	95
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae++ g+ + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ e+ XP_022725535.1 237 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGSASSKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPEK 331 89**************************97788899************************************************8766666 PP ..EEE CS B3 91 elvvk 95 +l++ XP_022725535.1 332 QLYID 336 66665 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MLNPQLSLLV LFFQSKKHNT NKPCSNDCIL CISLFPVCTT QKQERTMDRS CIDESTTSDS 60 ISISPSNISP LPTLTKSPNS LCRVASGTSM IVDSEAGVEA ESRKLPSSKY KGVVPQPNGR 120 WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGRDAV TNFKHLQESE EDDIEIAFLN 180 SHSKAEIVDM LRKHTYTDEL EQSRRSYGFD ANGKRVVRND AGFGSFGVEL KAREQLFEKA 240 VTPSDVGKLN RLVIPKQHAE KYFPLQSGSA SSKGVLLNFE DVTGKVWRFR YSYWNSSQSY 300 VLTKGWSRFV KEKNLKAGDI VSFQRSTGPE KQLYIDWKAR IGLGSGLENQ VGPVQMVRLF 360 GVNIFKIPGS ENDGLGGCNG KRTREMELLE LECSKKQRFC GVVTFPMIPL C

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MLNPQLSLLV LFFQSKKHNT NKPCSNDCIL CISLFPVCTT QKQERTMDRS CIDESTTSDS  60
ISISPSNISP LPTLTKSPNS LCRVASGTSM IVDSEAGVEA ESRKLPSSKY KGVVPQPNGR  120
WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGRDAV TNFKHLQESE EDDIEIAFLN  180
SHSKAEIVDM LRKHTYTDEL EQSRRSYGFD ANGKRVVRND AGFGSFGVEL KAREQLFEKA  240
VTPSDVGKLN RLVIPKQHAE KYFPLQSGSA SSKGVLLNFE DVTGKVWRFR YSYWNSSQSY  300
VLTKGWSRFV KEKNLKAGDI VSFQRSTGPE KQLYIDWKAR IGLGSGLENQ VGPVQMVRLF  360
GVNIFKIPGS ENDGLGGCNG KRTREMELLE LECSKKQRFC GVVTFPMIPL C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-148	RAV family protein