PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022726112.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27677.3 Da    PI: 6.6313
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022726112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-26959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgk+  y+s
  XP_022726112.1  9 KRIENRTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCS 59
                    79***********************************************96 PP
2K-box77.63.2e-2673170399
           K-box   3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     k +g+   e+ + e+l++ela L+ke++ Lq + R++ Ged++s+ ++eL qLeq+Le+s++k+R++Knell +q+++l++ke++lqeen ++ +
  XP_022726112.1  73 KVTGTCiPEHDNREQLYNELAELRKETHHLQLSMRRYTGEDMSSIPIEELDQLEQELERSVNKVRDRKNELLQQQLDNLRRKERMLQEENSNMYR 167
                     555555567788999****************************************************************************9987 PP

           K-box  97 kle 99 
                      ++
  XP_022726112.1 168 WIQ 170
                     766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGKIPIKR IENRTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS TGKMCQYCSE  60
PYRMEQIIER YQKVTGTCIP EHDNREQLYN ELAELRKETH HLQLSMRRYT GEDMSSIPIE  120
ELDQLEQELE RSVNKVRDRK NELLQQQLDN LRRKERMLQE ENSNMYRWIQ EHQAAIEYQQ  180
EGIEAKQVEH QQVLDQFPFY EEPSSVLQLA TIPQQFNSYQ LQLAQPNLQH SNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-89MIKC_MADS family protein