PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022726379.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 442aa MW: 48865.5 Da PI: 5.8916

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022726379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.1	4.3e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++ ++C ++ +lC+ C ++ H+ H++v XP_022726379.1 16 ARACDSCIKKRAGWYCAADDAFLCQACDSSVHSAnplarrHERV 59 578*****************************667888888876 PP
2	CCT	68.1	2.4e-23	386	428	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ XP_022726379.1 386 REARVSRYREKRGTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 428 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MISTKNVANA IGGKTARACD SCIKKRAGWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR 60 LKTASVKSSN NEAPLESFSP SWDKGFTRKA RTRRPAKASI HQKPFKAENT KRNNNPAPLV 120 PEVGADEISH EENEEEKFPH RVPIFDPFVS EPCASATSND ATMGAVRNDS ETAAAAASES 180 KAFLACNGHD VNGSHGLFPS EMDLAEFAAD VESLLGKGLE NESFAMEEIG LMDSKKDLLR 240 DCSLENGKVK IEDEESFEAG KECHVDSETD TVREPFELSF NYESPATCGE ENELVKEEVT 300 VKSNGDVEYE EDTAKKKRKL LLSLDYEAVS TAWTSQGSPW TSGGRPDFDP DECWPDCMGT 360 GGTEVHHSYS DLIGMGAQQA MRDGGREARV SRYREKRGTR LFSKKIRYEV RKLNAEKRPR 420 MKGRFVKRVS FLAGPAFPLL NK

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MISTKNVANA IGGKTARACD SCIKKRAGWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASVKSSN NEAPLESFSP SWDKGFTRKA RTRRPAKASI HQKPFKAENT KRNNNPAPLV  120
PEVGADEISH EENEEEKFPH RVPIFDPFVS EPCASATSND ATMGAVRNDS ETAAAAASES  180
KAFLACNGHD VNGSHGLFPS EMDLAEFAAD VESLLGKGLE NESFAMEEIG LMDSKKDLLR  240
DCSLENGKVK IEDEESFEAG KECHVDSETD TVREPFELSF NYESPATCGE ENELVKEEVT  300
VKSNGDVEYE EDTAKKKRKL LLSLDYEAVS TAWTSQGSPW TSGGRPDFDP DECWPDCMGT  360
GGTEVHHSYS DLIGMGAQQA MRDGGREARV SRYREKRGTR LFSKKIRYEV RKLNAEKRPR  420
MKGRFVKRVS FLAGPAFPLL NK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	320	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	6e-97	CO-like family protein