PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022727988.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 364aa MW: 39563.7 Da PI: 8.9161

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022727988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.1	5.1e-12	26	50	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022727988.1 26 QPDCGYFLKTGTCKYGSTCKYHHPK 50 789********************96 PP
2	zf-CCCH	38.8	1.6e-12	72	95	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_022727988.1 72 KSCPYYMRTGACKFGVACKFHHPQ 95 66********************97 PP
3	zf-CCCH	39.9	7.2e-13	216	241	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_022727988.1 216 DQPECRYYMNTGTCKYGSDCKYHHPK 241 689*********************96 PP
4	zf-CCCH	31.6	2.8e-10	262	286	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + +G CkyG++C+F H+ XP_022727988.1 262 GQAVCSSYNMNGLCKYGPTCRFDHP 286 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MLYRINPLIT VKGGQYREEL PERVGQPDCG YFLKTGTCKY GSTCKYHHPK DRNGAGPVTL 60 NVLGLPMRQD EKSCPYYMRT GACKFGVACK FHHPQPASPA AGLPVNGSVG SSILPQSGLP 120 YAGGLPTWPL SRAPYGRGNP HLPGSQSYMP VVVSPSQSII PAHGWSTYMG NMSPISPTGI 180 LGSNFVSYSM NPAESGSSGR LLLSSTFGSN FPERPDQPEC RYYMNTGTCK YGSDCKYHHP 240 KERIANSAVN GISPLGLPSR PGQAVCSSYN MNGLCKYGPT CRFDHPYVGY PYNYGLSLPL 300 YVFDASLLTY QRMPPAAHLS EAPLPSKLPD WARNTNSVSK KHHNLETKNS DDPPEQAASK 360 TSND

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MLYRINPLIT VKGGQYREEL PERVGQPDCG YFLKTGTCKY GSTCKYHHPK DRNGAGPVTL  60
NVLGLPMRQD EKSCPYYMRT GACKFGVACK FHHPQPASPA AGLPVNGSVG SSILPQSGLP  120
YAGGLPTWPL SRAPYGRGNP HLPGSQSYMP VVVSPSQSII PAHGWSTYMG NMSPISPTGI  180
LGSNFVSYSM NPAESGSSGR LLLSSTFGSN FPERPDQPEC RYYMNTGTCK YGSDCKYHHP  240
KERIANSAVN GISPLGLPSR PGQAVCSSYN MNGLCKYGPT CRFDHPYVGY PYNYGLSLPL  300
YVFDASLLTY QRMPPAAHLS EAPLPSKLPD WARNTNSVSK KHHNLETKNS DDPPEQAASK  360
TSND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-91	C3H family protein