PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022729005.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

ARF

Protein Properties

Length: 1017aa MW: 112325 Da PI: 6.2094

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022729005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.4	1.7e-20	136	223	1	83
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F XP_022729005.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI 223 99***************************9445444.38*********************************************7 PP
2	Auxin_resp	31.2	9.2e-12	214	249	48	83
Auxin_resp 48 afetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 f ++ + +r++Gt++g+sdldpvrW+nS+Wr+++ XP_022729005.1 214 LFAGDSVLFIRYMGTITGISDLDPVRWKNSQWRNMQ 249 5778888899***********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1017 aa Download sequence
MKMPATGAGA APNAAAPNLS EGGAPEKSIN PELWQACAGP LVNLPAAGTH VVYFPQGHSE 60 QVAASMKKDV DAQIPNYPNL PSKLLCLLHN VTLHADPDTD EVYAQMTLQP VSSFDKDALL 120 RSDLSLRANK PPPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD 180 LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRYMGTIT GISDLDPVRW 240 KNSQWRNMQV GWDESTAGER RNRVSIWEIE PVTAPFFICP PPFFRSKRPR QPGMPDDDSS 300 DLDNLFKRPM PWLGDDICMK DSQALPGLSL VQWMNMQHNP VLANTIQPNV MQSLSGSVMQ 360 NFAGADISRQ MGLSAQQIPQ PNNLQFNAQR LPQQVQQLDQ LPKLPSTMNT LGSIMQPQQL 420 SDMTQQSRQN LIAQTLPSNQ VQAQVLQPQT LVQSNNILLQ QQTSTQIHQL PRSLPQNLQQ 480 QRQQQQHLMG PNQQQNLMHS QLPDPASQLL QMPDNQIQFQ LLQKLQQQQQ SLLAQQSALQ 540 QPAQLAQPQD QQRQLLDASQ SFSTSVATSQ VLEMPQMSPT LLPQSNVVTQ QMSKNNSRAN 600 VRFSQPPLQS KLQQQQPGML PEIPGHVGPS PTTATNQLST AVSSVMTGAV IAAQSVITDD 660 NPSCSTSPST NCPNVLQPLI NSRAHRITGL GDDMAQSAAT VLNPNTLETM SSNANINKEL 720 QQKSDVKPLL NISKSQNLGL FAPQNYINGV NAQADYLDTS SSTTSVCLSQ NDVHLQQNNL 780 LTYNPQTMLL RDTSQDGEVQ ADPRNNASYS TNMEGQIGMT MNSDNLLTKG MMGLGKDFSN 840 NLSSGGMLTT YENPKDVQQE LSSSMVSQSF GVPDMTFNSI DSTVNDSSFI NRAAWAPQPQ 900 FQRMRTYTKV YKRGAVGRSI DIARYSGYDQ LKQDLARRFG IEGQLEDRGR IGWKLVYVDH 960 ENDVLLVGDD PWDEFVNCVR CIKILSPQEV QQMSLDGDFG NSVLPNQACS SSGNGNA

Sequence ? help Back to Top

Protein Sequence Length: 1017 aa Download sequence

MKMPATGAGA APNAAAPNLS EGGAPEKSIN PELWQACAGP LVNLPAAGTH VVYFPQGHSE  60
QVAASMKKDV DAQIPNYPNL PSKLLCLLHN VTLHADPDTD EVYAQMTLQP VSSFDKDALL  120
RSDLSLRANK PPPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRYMGTIT GISDLDPVRW  240
KNSQWRNMQV GWDESTAGER RNRVSIWEIE PVTAPFFICP PPFFRSKRPR QPGMPDDDSS  300
DLDNLFKRPM PWLGDDICMK DSQALPGLSL VQWMNMQHNP VLANTIQPNV MQSLSGSVMQ  360
NFAGADISRQ MGLSAQQIPQ PNNLQFNAQR LPQQVQQLDQ LPKLPSTMNT LGSIMQPQQL  420
SDMTQQSRQN LIAQTLPSNQ VQAQVLQPQT LVQSNNILLQ QQTSTQIHQL PRSLPQNLQQ  480
QRQQQQHLMG PNQQQNLMHS QLPDPASQLL QMPDNQIQFQ LLQKLQQQQQ SLLAQQSALQ  540
QPAQLAQPQD QQRQLLDASQ SFSTSVATSQ VLEMPQMSPT LLPQSNVVTQ QMSKNNSRAN  600
VRFSQPPLQS KLQQQQPGML PEIPGHVGPS PTTATNQLST AVSSVMTGAV IAAQSVITDD  660
NPSCSTSPST NCPNVLQPLI NSRAHRITGL GDDMAQSAAT VLNPNTLETM SSNANINKEL  720
QQKSDVKPLL NISKSQNLGL FAPQNYINGV NAQADYLDTS SSTTSVCLSQ NDVHLQQNNL  780
LTYNPQTMLL RDTSQDGEVQ ADPRNNASYS TNMEGQIGMT MNSDNLLTKG MMGLGKDFSN  840
NLSSGGMLTT YENPKDVQQE LSSSMVSQSF GVPDMTFNSI DSTVNDSSFI NRAAWAPQPQ  900
FQRMRTYTKV YKRGAVGRSI DIARYSGYDQ LKQDLARRFG IEGQLEDRGR IGWKLVYVDH  960
ENDVLLVGDD PWDEFVNCVR CIKILSPQEV QQMSLDGDFG NSVLPNQACS SSGNGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	1e-105	ARF family protein