PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022729441.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 454aa MW: 50410.4 Da PI: 4.6881

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022729441.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.3e-12	136	158	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G++CkF+H+ XP_022729441.1 136 EDCAYYMKTGLCKFGPNCKFNHP 158 89********************8 PP
2	zf-CCCH	22.9	1.5e-07	164	184	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++rtG Ck+G C+++H++ XP_022729441.1 164 QYYLRTGGCKFGKACRYNHSR 184 59*****************95 PP
3	zf-CCCH	39.5	9.3e-13	205	229	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ XP_022729441.1 205 GEKECPYYMRNGSCKYGANCRFNHP 229 6789********************9 PP
4	zf-CCCH	26.9	8.4e-09	341	367	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ XP_022729441.1 341 PGQPECSYFLKTGDCKFKSNCKYHHPK 367 5789*********************96 PP
5	zf-CCCH	35.2	2e-11	391	413	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++r+G+Ck+G+ CkF H++ XP_022729441.1 391 ICSHYSRYGICKFGPACKFDHSM 413 8********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MSQSEETPIS DTTPTYSALN VGFHSPDPGP ILDIDASSSD LNHWENEHNE SNFQRQLQDL 60 NLKEKEEEDA EVKEEEEEVE NKDDGERESD ADDNYADADG GGDNEDEEEK NEDESDDENV 120 KRHERSSHYP VRPEAEDCAY YMKTGLCKFG PNCKFNHPIR RKNQYYLRTG GCKFGKACRY 180 NHSRAKSLVV PILELNFLGL PIRQGEKECP YYMRNGSCKY GANCRFNHPD PTAAGACDPP 240 SAYSNGGSVS PQAAPQVNMT SWSSPRTLNE TAAYMPIVFS PTQGVPPPNP EWNGYQTTVY 300 PPSERSLHPT PAFVISNPST DTTVYAPLPP QMVVDEFPFR PGQPECSYFL KTGDCKFKSN 360 CKYHHPKDRV PKPAPCALSD KGLPLRPDQI ICSHYSRYGI CKFGPACKFD HSMQAVPSEV 420 SGLDQPPPIS HSTATEQTVI AGSNGTDAAV QQPV

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MSQSEETPIS DTTPTYSALN VGFHSPDPGP ILDIDASSSD LNHWENEHNE SNFQRQLQDL  60
NLKEKEEEDA EVKEEEEEVE NKDDGERESD ADDNYADADG GGDNEDEEEK NEDESDDENV  120
KRHERSSHYP VRPEAEDCAY YMKTGLCKFG PNCKFNHPIR RKNQYYLRTG GCKFGKACRY  180
NHSRAKSLVV PILELNFLGL PIRQGEKECP YYMRNGSCKY GANCRFNHPD PTAAGACDPP  240
SAYSNGGSVS PQAAPQVNMT SWSSPRTLNE TAAYMPIVFS PTQGVPPPNP EWNGYQTTVY  300
PPSERSLHPT PAFVISNPST DTTVYAPLPP QMVVDEFPFR PGQPECSYFL KTGDCKFKSN  360
CKYHHPKDRV PKPAPCALSD KGLPLRPDQI ICSHYSRYGI CKFGPACKFD HSMQAVPSEV  420
SGLDQPPPIS HSTATEQTVI AGSNGTDAAV QQPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-126	C3H family protein